Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., exoribonuclease II protein from Sinorhizobium meliloti 1021

 Score =  370 bits (951), Expect = e-106
 Identities = 262/769 (34%), Positives = 391/769 (50%), Gaps = 39/769 (5%)

Query: 22  IPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYA 81
           +PSRE ++ F+ +     ++ ++ +A  L+GE + E L+  LR++E DG LV  +R+   
Sbjct: 40  VPSREVLMRFIAENPQHASKREIAKAFGLKGEARVE-LKGLLRSLEEDG-LVEKKRKSLV 97

Query: 82  LPEKLEMVKGYVIGHKDGHG--------WVRPEGS----LNKEGDILLPHHQMRTLIHGD 129
            P  L  V    I  +D  G        W+  +G     L K+  +     +      GD
Sbjct: 98  RPGGLPPVTVLDITIRDVDGDLIGRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGD 157

Query: 130 FVLVQPSGTDKRGRKE--GRLVRILEERNGQIVGRF-FFEYGYSYVVPDDSRIHHDILIP 186
            VL +     +RG      R++++L++R   ++G F     G   ++P D R   ++LI 
Sbjct: 158 RVLAKIFPAKERGGPAYTARIIKVLDKRKDAVLGVFRATPGGGGRLMPIDKR-GEELLID 216

Query: 187 NDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPA 246
            +    A+ G++V   ++  G R      +V  V+G   +    + IAI  H IPH +P 
Sbjct: 217 PEFIGDAKEGDLVEAHLSRIG-RYGLPRAQVQNVVGSVASEKAISMIAIHAHGIPHVFPE 275

Query: 247 EVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG----GGWRL 302
            V Q+     E         R D R LPL+TID  DA+D DDAVY E        GG  +
Sbjct: 276 RVLQEA----EAARPATMAHREDWRTLPLITIDPADAKDHDDAVYAEPDSSPDNPGGVIV 331

Query: 303 WVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362
            VAIADVS+YVR  +ALD EA+ RGNSVYFP +VVPMLPE +SN LCSL   VDR  +  
Sbjct: 332 TVAIADVSWYVRARSALDLEALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAV 391

Query: 363 EMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQ 422
            M  S+ G+ +G+  +  +M S A+L+Y +    ++G  + +     L   L+ L + Y+
Sbjct: 392 RMRFSKEGRKAGHTFHRIMMRSAAKLSYQQAQTAIDGAPDDKTG-PILDTILKPLWEAYR 450

Query: 423 VLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVE 482
            L   R+ R  +E +  E K I      ++ +    R DAHKLIEE MI AN+A+A  +E
Sbjct: 451 TLTRGRERRQPLELDVPERKIILKPDGTVDRVFVPERLDAHKLIEEMMIQANVAAAETLE 510

Query: 483 KAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELI 542
           + ++  +YRVH+ P   +    R+FL  L + L+ G       +  ++ +   +P + ++
Sbjct: 511 QKRQVLIYRVHDQPSLAKQESLREFLATLDIALAKGGNMRANHFNGILAKADGKPYETIV 570

Query: 543 QTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQD 602
             M+LRS  QA+Y+ +N GHFGL L RYAHFTSPIRRY DL++HRA+   +   EG    
Sbjct: 571 NQMVLRSQSQAIYSPENIGHFGLNLLRYAHFTSPIRRYADLIVHRALVSALGLGEG---- 626

Query: 603 RWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANV 662
                G        +D    + S  ERRA  A R+  D L   ++   VGEE +G V+ V
Sbjct: 627 -----GIMPEEEAALDDIAAEISTFERRAMAAERDTIDRLIAHHLNGRVGEEFDGRVSGV 681

Query: 663 TSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVN 722
           T  G FV L     DG + ISTL  DY+ YD   Q L GE  G  YRLGD V+VK++   
Sbjct: 682 TKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSGEKSGLGYRLGDPVQVKLVEAV 741

Query: 723 LDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGK 771
                + FE++   RK+    ++  K     R  A  +K   T+   G+
Sbjct: 742 PLAGALRFEMLSEGRKMPTAMRSFHKAGRRDRTGA--RKRPGTRPPRGR 788