Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

 Score =  939 bits (2426), Expect = 0.0
 Identities = 473/810 (58%), Positives = 591/810 (72%), Gaps = 16/810 (1%)

Query: 8   DPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAME 67
           DP  +RE + YDNPIPSRE+ILE+L     P  R+ + EALK+  EE+ E LRRRLRAME
Sbjct: 4   DPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAME 63

Query: 68  RDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIH 127
           RDG+LVFTR QCY LPE+++++ G V+GHKDG G+ RP+   N   D+ +    M+   H
Sbjct: 64  RDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPD---NGGDDLFINERDMQLYFH 120

Query: 128 GDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPN 187
           GD VL Q +G D+RGR++ R+VR+L ER+  +VGRF+ + G ++VV DD RI H+ILI N
Sbjct: 121 GDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIAN 180

Query: 188 DLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAE 247
           + + GAR G+VVVIE+T R  R     GKV EVLG+ MAPGME +IA+R + +PH+W A 
Sbjct: 181 EDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV 240

Query: 248 VEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIA 307
           +E+++  + + V +E K+GRVDLR LPLVTIDGEDARDFDDAVY E K+GGGWRLWVAIA
Sbjct: 241 IEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIA 300

Query: 308 DVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 367
           DVS+YVR D+ALDKEA  RGNSVYFPSQV+PMLPE LSNGLCSLNP VDRLCMV EMT+S
Sbjct: 301 DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS 360

Query: 368 ETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSA 427
             G LSGYK Y AVM+SHAR TYT+V  +LEG E +++ +KAL PHL+ L ++Y  L   
Sbjct: 361 AKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGGE-VKDEHKALFPHLKVLQELYLCLDEQ 419

Query: 428 RDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEA 487
           R ERGAI FET+ET+FIFN QRKI+ I P  RN AHK+IEECMILAN+A+A  V K K  
Sbjct: 420 RAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGH 479

Query: 488 ALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLL 547
            LYRVHE P E++LT F+DFL E GL ++GGLEP P DY  LM Q+  RPD ELIQ MLL
Sbjct: 480 VLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLL 539

Query: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPT 607
           RSM+QAVY  DN GHFGLAL+ Y+HFTSPIRRYPDL+LHR I+YL+AK+ G   ++WT  
Sbjct: 540 RSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASEKWTAD 599

Query: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGF 667
           GGYHY  +++D  GE+CS TERRAD+ATR+VSDWLKCE+MQDHVG+   GV+A+VTSFG 
Sbjct: 600 GGYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASVTSFGL 659

Query: 668 FVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQ 727
           FVRL EL IDGLVHIS+L +DY+ YDP  QRL+GE+ G IY++GD V VKV +VNLDDRQ
Sbjct: 660 FVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASVNLDDRQ 719

Query: 728 IDFELVETSRKLRGQGK---TAKKRAD-EARAKAQGK-------KEAATKGACGKSPTKS 776
           ID ++       +  GK   TA+ RA+ E      GK       +     G  G S TK 
Sbjct: 720 IDLQMEGERPGRKKAGKKPTTARDRANLEGARTGNGKPGKGGSVRSQLAGGKLGGSETKK 779

Query: 777 ELKPQVEATRRPDSEGRSKPKKTKAPKKRK 806
               + +  ++P     +KPK  K  K++K
Sbjct: 780 R-DAKAKDGKKPKKAAEAKPKAAKRVKRKK 808