Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., putative ribonuclease R from Phaeobacter inhibens DSM 17395

 Score =  375 bits (963), Expect = e-108
 Identities = 264/776 (34%), Positives = 387/776 (49%), Gaps = 34/776 (4%)

Query: 22  IPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYA 81
           IPS+  IL+++       ++ D+ +A  ++G ++ + L+R L+ +E +G L   R++ Y 
Sbjct: 4   IPSKAEILDWIAAHPTHTSKRDIAKAFGIKGSDRID-LKRILKELEAEGHLE-KRKKTYR 61

Query: 82  LPEKLEMVKGYVIGHKDGHG--WVRP---EGSLNKEGDILLPHHQMRTLIHGDFVLVQPS 136
            PE+L  V    I   DG G  + RP    G   +   +++P      L  GD +L + +
Sbjct: 62  DPERLPPVSVLQIKAPDGDGDLFARPLEWHGEGVEPVVLVMPRASDPALGEGDRILARLT 121

Query: 137 GT-DKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPNDLRAGARM 195
              D     E RL+R +     +++G F        +VP D     +  +  +   GAR 
Sbjct: 122 VVQDAEYHYEARLIRRIGTNPRRVIGIFRKGDEGGRIVPIDKSASTEWAVAENATHGARD 181

Query: 196 GNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGL 255
           G +V  E     +R      +VVE LG+  AP   + IAI  H I   +P EV   +A  
Sbjct: 182 GELVEAEQAGPKSRLGLPRARVVERLGDPSAPKAVSLIAIHQHGILDHFPDEV---IAEA 238

Query: 256 TEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEA----KKGGGWRLWVAIADVSY 311
               P   K GR DLR LPL+TID  DARD DDA Y  A    K  GG  +WVAIADV+ 
Sbjct: 239 DAAKPMGLK-GREDLRDLPLITIDPADARDHDDACYAHADDDPKNPGGHVIWVAIADVAA 297

Query: 312 YVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGK 371
           YV+P +ALD+ A  RGNS YFP +VVPMLP+ LS  LCSL+  V R C+   M +   G 
Sbjct: 298 YVQPGSALDRAARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACVAVRMQIDADGN 357

Query: 372 LSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSARDER 431
              ++    +M S A L Y +V E ++G    R     L P ++ L+  Y  L  AR ER
Sbjct: 358 KIAHRFVRGLMRSAASLHYAEVQEAMDGAPTDRTG-PFLEPVIKPLYAAYAALVKARAER 416

Query: 432 GAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYR 491
             ++ +  E K + + +  + S+    R DAHKLIEE M+LAN+A+A  + K +   L+R
Sbjct: 417 QPLDLDLPERKIVLDEKGTVASVNFRDRLDAHKLIEEFMVLANVAAAETLIKKRTPLLFR 476

Query: 492 VHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLLRSMK 551
           VHE P  E+L   R+     GL L+ G          L+       D ELI    LRSM+
Sbjct: 477 VHEEPSPEKLEALRETARAAGLALAKGQVLQTRHLNALLHGAAGTDDAELINISTLRSMQ 536

Query: 552 QAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPTGGYH 611
           QA Y  +N GHFGLAL+ YAHFTSPIRRY DL++HRA+              W   G   
Sbjct: 537 QAYYGPENFGHFGLALRNYAHFTSPIRRYADLIVHRAL---------ITAHGWGDDGLDT 587

Query: 612 YSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRL 671
              + ++      S TERR+  A R+ +D     Y+ + VG E EG ++ +  FG FV+L
Sbjct: 588 AEIERLEQTATHISETERRSMMAERDTTDRYLAAYLAERVGNEFEGRISGIARFGAFVKL 647

Query: 672 TELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQIDFE 731
            E   DGLV + ++  +++H+D     L+G   G I  +G  VKV++         ++ E
Sbjct: 648 DETGADGLVPVRSIGREFFHFDAEAGTLMGADTGLIIAIGQRVKVRLAQATPVTGGLELE 707

Query: 732 LVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGKSPTKSELKPQVEATRR 787
           L+    K    G    +R+   R+  +   +A  K        +S++K +VE  RR
Sbjct: 708 LLSIEDKPMPAGGGGGRRSPAGRSVKRKSAKAKAK--------RSKIKRKVERKRR 755