Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 824 a.a., ribonuclease R (RefSeq) from Shewanella loihica PV-4

 Score =  941 bits (2433), Expect = 0.0
 Identities = 475/816 (58%), Positives = 588/816 (72%), Gaps = 13/816 (1%)

Query: 8   DPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAME 67
           DP   RE + YDNPIPSREYIL++L     P+NR  + +AL +  EEQ E LRRRLRAME
Sbjct: 4   DPHLKREQEKYDNPIPSREYILDYLRSQQSPLNREKIAQALNISDEEQLEALRRRLRAME 63

Query: 68  RDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGD-ILLPHHQMRTLI 126
           RDG+LVFTR Q Y LPE+++++ G V+GHKDG G+++    L++ GD + + +  M    
Sbjct: 64  RDGELVFTRGQAYGLPERMDLLSGTVLGHKDGFGFLK----LDEGGDDLFINNRDMLMYF 119

Query: 127 HGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIP 186
           HGD VL Q +G D++GR+E R+VR+  ER   +VGRF  + G ++V+ DD RI  +ILIP
Sbjct: 120 HGDKVLAQKAGVDRKGRREARIVRLTHERTAPLVGRFHLDSGMAFVITDDKRITQEILIP 179

Query: 187 NDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPA 246
           +D R GAR G+VVVIE+T R  R     GKV EVLG+ MAPGME +IA+R + +PH W +
Sbjct: 180 DDDRNGARQGDVVVIELTRRPGRYMKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSS 239

Query: 247 EVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAI 306
            +E+++  + +EV EE K GRVDLR LPLVTIDGEDARDFDDAVY E KK GGWRLWVAI
Sbjct: 240 LIEKKLRKIPDEVTEEDKLGRVDLRKLPLVTIDGEDARDFDDAVYAETKKSGGWRLWVAI 299

Query: 307 ADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 366
           ADVS+YVR ++ALDKEA  RGNSVYFPSQV+PMLPE LSNGLCSLNP VDRLCMV EMT+
Sbjct: 300 ADVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTI 359

Query: 367 SETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKS 426
           S  GKLSGYK Y AVM+SHARLTYT+V E+LEG E + +  K L PHL+ L  +Y  L  
Sbjct: 360 SAAGKLSGYKFYPAVMHSHARLTYTQVAEMLEGGE-VSDELKPLFPHLQTLQSLYLTLDD 418

Query: 427 ARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKE 486
            R +RGAI FET ET+FIFNA RKIE IEP  RN AHK+IEECMILAN+A+A  V+K K 
Sbjct: 419 TRAQRGAIAFETTETQFIFNADRKIERIEPRTRNQAHKIIEECMILANVAAAKFVKKHKG 478

Query: 487 AALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTML 546
             LYRVHE P E++LT F+DFL E GL + GGLEP P DY  LM+Q+ +RPD ELIQ ML
Sbjct: 479 EVLYRVHEAPSEQKLTNFKDFLKERGLSMGGGLEPEPADYQALMEQVVDRPDAELIQVML 538

Query: 547 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTP 606
           LRSM+QA Y  DN GHFGLAL+ Y+HFTSPIRRYPDL+LHR I+YL+AK+ G   D+WTP
Sbjct: 539 LRSMRQATYTPDNEGHFGLALEEYSHFTSPIRRYPDLILHRVIRYLLAKERGEASDKWTP 598

Query: 607 TGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFG 666
            GGYHY  +++D  GE+CS TERRAD+ATR+VSDWLKCE+M+DHVG+  E V+A+VT FG
Sbjct: 599 DGGYHYQIEELDLLGEECSNTERRADEATRDVSDWLKCEFMRDHVGDTFEAVIASVTHFG 658

Query: 667 FFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDR 726
            FVRL++L IDGLVHISTL  DYYHYD + QRLVGE+ G +Y++GD V VKV AVNLDDR
Sbjct: 659 MFVRLSDLFIDGLVHISTLGGDYYHYDNMRQRLVGEASGQVYQIGDPVTVKVAAVNLDDR 718

Query: 727 QIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGKSPTKSELKPQVEATR 786
           QID  +V    K     +  K      R   +G K A      GK   K   K +  + R
Sbjct: 719 QIDLMMVGDDGKTSRPRRAKKPLTARERVNLEGAKMARK----GKEDDKPSGKRR--SAR 772

Query: 787 RPDSE-GRSKPKKTKAPKKRKDQARKKSGKVRDKTK 821
           R D++ G SKP   K+   +   ++ K+G  +   K
Sbjct: 773 RSDAKPGTSKPGAGKSGAGKAGASKSKAGAKKSSAK 808