Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 813 a.a., exoribonuclease R from Marinobacter adhaerens HP15

 Score =  740 bits (1910), Expect = 0.0
 Identities = 397/766 (51%), Positives = 506/766 (66%), Gaps = 25/766 (3%)

Query: 53  EEQYEGLRRRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKE 112
           EE  E LRRRL AM RDGQL+  RR  Y   E+ ++V G VIGHKDG G++ P+      
Sbjct: 10  EEGIEALRRRLIAMCRDGQLICNRRGAYLPIEEADLVTGRVIGHKDGFGFLVPDDG---G 66

Query: 113 GDILLPHHQMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYV 172
            D+ L   QMR + HGD V  +    D RGR+EG +V +LE R  Q VGRFF E G S+V
Sbjct: 67  SDLFLTARQMRQVFHGDRVAARVDRVDDRGRREGVIVEVLEYRTSQTVGRFFQESGISFV 126

Query: 173 VPDDSRIHHDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQ 232
           VP+++RI+H++LIP +    AR G  VV++I  + T     +GKVVEVLGE+MAPGME  
Sbjct: 127 VPENARINHEVLIPQENCGNARHGQYVVVDIVRQPTVRTQPLGKVVEVLGEHMAPGMEID 186

Query: 233 IAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYC 292
           +AIR++ IPH WP  V +Q A + EEV E+ K  R D+R L LVTID E ARDFDDAVYC
Sbjct: 187 VAIRSYDIPHSWPPAVGEQTAAIPEEVTEKDKVNRKDIRNLRLVTIDDETARDFDDAVYC 246

Query: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLN 352
           E +  GG+RL VAIADVS+YVRP T LD+EA+NR  SVYFP  VVPMLPE LSNGLCSLN
Sbjct: 247 EPRARGGYRLLVAIADVSHYVRPGTPLDEEAVNRSTSVYFPDHVVPMLPEKLSNGLCSLN 306

Query: 353 PQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDE-----ELRERY 407
           P VDRLCMV +MT+S  G +S Y  Y+AVM SHARLTY KV  +LE  +     +L E+Y
Sbjct: 307 PGVDRLCMVADMTISAAGNISSYSFYQAVMFSHARLTYNKVSTMLEHPDTEQGYKLCEQY 366

Query: 408 KALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIE 467
             ++P L  L+ +YQ+L+ AR ERGAI+FET ETK +F+A RKIE I PV RNDAHK+IE
Sbjct: 367 ANVLPQLHNLYGLYQLLRKARTERGAIDFETTETKIVFDADRKIEEIVPVQRNDAHKIIE 426

Query: 468 ECMILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYA 527
           ECM+ AN+A+A  ++K K  ALYRVH+ P EERL   R FLGELGL L GG  P+  DY 
Sbjct: 427 ECMLCANVATARFLKKHKLPALYRVHDGPSEERLNAVRLFLGELGLQLGGGDSPTSADYQ 486

Query: 528 NLMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHR 587
            L+  I +R D  +IQT++LRS+ QAVY+ +  GHFGL    YAHFTSPIRRYPDL+ HR
Sbjct: 487 ELLNSIKDRSDANVIQTVMLRSLSQAVYSPEEGGHFGLGYAGYAHFTSPIRRYPDLINHR 546

Query: 588 AIKYLIAKQEGRNQDRWTP-------TGGYHYSFDDMDFYGEQCSMTERRADDATREVSD 640
           AIK +I    G+      P          Y Y    M+  GE  SM ERRADDATR+V  
Sbjct: 547 AIKSVI--HGGQPSKDVVPPPKPDPELAEYPYDMARMEQLGEHTSMAERRADDATRDVMA 604

Query: 641 WLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLV 700
           WLKCEY+ DHVGEE +GV+A+V  FGFFV L+ ++I+GLVH+STL+ D++H+D    RL+
Sbjct: 605 WLKCEYLSDHVGEEYDGVIASVVPFGFFVELSGVYIEGLVHVSTLSGDFFHHDSAKHRLI 664

Query: 701 GESFGAIYRLGDAVKVKVLAVNLDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGK 760
           GE     +RLGD V+VKV+ V ++DR+ID EL+  S  +  Q      +  +   + +GK
Sbjct: 665 GERTAMSFRLGDEVRVKVVRVGMEDRKIDLELI--SEPVHRQADRDALKVPDKGERGKGK 722

Query: 761 KEAATKGACGKSPTKSELKPQVEATRRPDSEGRSKPKKTKAPKKRK 806
           +     G  GK P ++  KP  + +  P   G  +P+K  A    K
Sbjct: 723 R---GPGKGGKPPGRT--KPG-QKSASPGEPGLKRPRKRPASASSK 762