Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., exoribonuclease R from Marinobacter adhaerens HP15

 Score =  301 bits (770), Expect = 1e-85
 Identities = 190/642 (29%), Positives = 318/642 (49%), Gaps = 26/642 (4%)

Query: 108 SLNKEGDILLPHHQMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEY 167
           +L++  D+ LP  +M+ ++ GD V V     +K G+ +G +  +LE R    VGR+  + 
Sbjct: 39  ALDEGRDVFLPPEEMQKVLPGDRVNVTEQEVEK-GKTQGVVDELLETRLNTFVGRYLVKG 97

Query: 168 GYSYVVPDDSRIHHDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAP 227
              +VVP+   I+  I IP   R  A+  + +  +I     ++     KV+ V+G+   P
Sbjct: 98  KGHFVVPETPGINRWIFIPPKERMNAQQDDYIYCQIHKHPIKDGKGQAKVLRVIGKAGEP 157

Query: 228 GMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFD 287
           G+E    + T  +   WP  V  Q   L E   E  + GR D    P VTID    +D D
Sbjct: 158 GIERSFTLATFDLADTWPDAVRAQADSLGEGDIESRETGREDRTDRPYVTIDSPGTQDMD 217

Query: 288 DAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNG 347
           DA+  E     GW L +AIAD +  +  D+  ++EA NR  ++YFP + +PMLP+ +S  
Sbjct: 218 DALLAEPN-ATGWTLSIAIADPTAVIDTDSPAEQEAFNRATAIYFPGEPLPMLPDSISTR 276

Query: 348 LCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEG--DEELRE 405
           LCSL P+  RL +VC++ V+  G L  Y  ++AV+ S  +L+Y  V  ++EG  D++++ 
Sbjct: 277 LCSLMPEAKRLSLVCDLQVNNDGSLGDYSFHQAVIQSKGKLSYELVSNLIEGREDDDIKA 336

Query: 406 RYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKL 465
             +A+   L++LH+    L+  R+E   +  +  E +   +  ++I  IEP ++N+AH+L
Sbjct: 337 LPEAVANSLDQLHQAATALRKWRNEHALLSGDRPEFRLRLDENKRIRLIEPSIQNEAHRL 396

Query: 466 IEECMILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTD 525
           +EECM+ AN  +A  +     A L+  H    ++R    R  +      LSG        
Sbjct: 397 VEECMVAANRCAADFLSN-HTAGLFIQHPGLRDDRADNIRSLIDSHAPHLSGVDAHQAEG 455

Query: 526 YANLMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLL 585
           +  LMK+      +  ++ +L R + +A  +   A H G+ L  Y  FTSP+R++ D  +
Sbjct: 456 FRKLMKETDSLEAEVPVKAILSRQLARAELSFKPAPHQGMGLDAYTTFTSPLRKFSDFYV 515

Query: 586 HRAIKYLI--AKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLK 643
           HR IK  +     +   +D+                  E     + RA  A   +  WLK
Sbjct: 516 HRLIKAALWDTPMKALTEDQL-----------------EALQAAQIRARQAANSLESWLK 558

Query: 644 CEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGES 703
            ++ +    E + GV++     GFFVRL    ++G V    L +  Y +DP+  RL+   
Sbjct: 559 SDFAKTLGEEPMAGVISRTVPAGFFVRLDANGLEGFVSCKDL-DGKYSFDPVTMRLIHNK 617

Query: 704 FGAIYRLGDAVKVKVLAVNLDDRQIDFELVETSRKLRGQGKT 745
            G I++L   V V    V+ + RQI+F+LVE ++++  Q  T
Sbjct: 618 NGRIFQLEQPVTVSFSGVDDERRQINFKLVE-AQEIASQSST 658