Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., exoribonuclease II from Klebsiella michiganensis M5al

 Score =  157 bits (396), Expect = 2e-42
 Identities = 164/683 (24%), Positives = 298/683 (43%), Gaps = 65/683 (9%)

Query: 66  MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125
           M +D  L+   +Q   L  +   V+G V G + G G++     ++ +    +P  QM+ +
Sbjct: 1   MFQDNPLLAQLKQ--QLHSQTPRVEGVVKGTEKGFGFLE----VDSQKSYFIPPPQMKKV 54

Query: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDIL- 184
           +HGD ++   + T+K  R+      ++E    + VG+   +     +VPD     H +L 
Sbjct: 55  MHGDRIIAVVN-TEKE-RESAEPEELVEPFLTRFVGKVHKKDDRLSIVPD-----HPLLK 107

Query: 185 --IPNDLRAGA----RMGNVVVIEITDRGTR-NRGMMGKVVEVLGENMAPGMETQIAIRT 237
             IP     G     + G+  V E+     + +RG   ++ + +       +   + +  
Sbjct: 108 DAIPCRAARGVEHDFKEGDWGVAEMRRHPLKGDRGFYAELTQYITYGDDHFVPWWVTLAR 167

Query: 238 HQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG 297
           H +  E P        G+  E+ +E  + R DL  L  VTID     D DDA+Y E    
Sbjct: 168 HNLEKEAPD-------GVATEMLDEGLERR-DLTELAFVTIDSASTEDMDDALYVEQNAD 219

Query: 298 GGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDR 357
           G   L VAIAD + ++   + LD  A  R  + Y P   +PMLP  LS+ LCSL P   R
Sbjct: 220 GKLHLTVAIADPTAWIAEGSKLDNTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRPNAVR 279

Query: 358 LCMVCEMTVSETGKL-SGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEE 416
             + C M +++ G +    + + A + S A+L Y  V + LE +   +   + +   ++ 
Sbjct: 280 PVLACRMILADDGAIEDDIQFFAATIESKAKLAYDDVSDWLENNGSWQPDSETVARQIKL 339

Query: 417 LHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIA 476
           L ++       R     +  +  + +F+   + ++  I    R  A++++EE MI ANI 
Sbjct: 340 LQEVCLRRSEWRKNHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANIC 399

Query: 477 SASLVEKAKEAALYRVH---EPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQI 533
           +A ++       +Y VH   +P   E+L      L    + +      +   +  L +++
Sbjct: 400 AARVLRDKLGFGVYNVHTGFDPANTEQLAA---LLKTHDVHVDPVEVLTLEGFCKLRREL 456

Query: 534 GERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLI 593
             +P    + + + R    A  + +   HFGL L+ YA +TSPIR+Y D++ HR +K +I
Sbjct: 457 DAQP-SGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAII 515

Query: 594 AKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADD--ATREVSDWLKCEYMQDHV 651
            K E  ++ +           DD+        M ERR  +  A R+V DWL   Y+    
Sbjct: 516 -KGEAISRPQ-----------DDV-----AIQMAERRRLNRMAERDVGDWLYARYLNPQA 558

Query: 652 G--EELEGVVANVTSFGFFVRLTELHIDGLV---HISTLANDYYHYDPIGQ-RLVGESFG 705
           G        + +V+  G  VRL +      +    +  + ++       G  ++ GE   
Sbjct: 559 GTTTRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDELVCSQENGTVQIKGE--- 615

Query: 706 AIYRLGDAVKVKVLAVNLDDRQI 728
            +Y++ D + V +  V ++ R +
Sbjct: 616 VVYKVTDVIDVTIAEVRMETRSV 638