Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., exoribonuclease II from Escherichia coli Nissle 1917

 Score =  160 bits (406), Expect = 2e-43
 Identities = 152/617 (24%), Positives = 266/617 (43%), Gaps = 44/617 (7%)

Query: 66  MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125
           M +D  L+   +Q   L  +    +G V   + G G++     ++ +    +P  QM+ +
Sbjct: 1   MFQDNPLLAQLKQ--QLHSQTPRAEGVVKATEKGFGFLE----VDAQKSYFIPPPQMKKV 54

Query: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDI-- 183
           +HGD ++       +R   E     ++E    + VG+   +     +VPD   +   I  
Sbjct: 55  MHGDRIIAVIHSEKERESAEPE--ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112

Query: 184 LIPNDLRAGARMGNVVVIEITDRGTR-NRGMMGKVVEVLGENMAPGMETQIAIRTHQIPH 242
                L    + G+  V E+     + +R    ++ + +       +   + +  H +  
Sbjct: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172

Query: 243 EWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRL 302
           E P        G+  E+ +E    R DL AL  VTID     D DDA++ +A   G  +L
Sbjct: 173 EAPD-------GVATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDGKLQL 224

Query: 303 WVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362
            VAIAD + ++   + LDK A  R  + Y P   +PMLP  LS+ LCSL     R  + C
Sbjct: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284

Query: 363 EMTVSETGKL-SGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMY 421
            MT+S  G +    + + A + S A+L Y +V + LE   + +   +A+   +  L ++ 
Sbjct: 285 RMTLSTDGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344

Query: 422 QVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLV 481
           Q     R     +  +  + +FI   + ++  I    R  A++++EE MI ANI +A ++
Sbjct: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404

Query: 482 EKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKEL 541
                  +Y VH              L   GL +      +   +  L +++  +P    
Sbjct: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463

Query: 542 IQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEG-RN 600
           + + + R    A  + +   HFGL L+ YA +TSPIR+Y D++ HR +K +I  +   R 
Sbjct: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523

Query: 601 QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADD--ATREVSDWLKCEYMQDHVGEE--LE 656
           QD  T                    M ERR  +  A R+V DWL   +++D  G +    
Sbjct: 524 QDEIT------------------VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565

Query: 657 GVVANVTSFGFFVRLTE 673
             + +++  G  VRL +
Sbjct: 566 AEIVDISRGGMRVRLVD 582