Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 886 a.a., ribonuclease R (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  412 bits (1060), Expect = e-119
 Identities = 288/813 (35%), Positives = 420/813 (51%), Gaps = 56/813 (6%)

Query: 25  REYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYALPE 84
           R+ +++   +A  P+  + L   L L  +E+   L   L A++ +G+++  R   + L +
Sbjct: 16  RDALMQAFREAQRPLRLDMLLRILGLHRKEK-RTLEESLEALQAEGRILRLRGGAWGLTD 74

Query: 85  KLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGDFVLVQ--PSGTDKRG 142
            ++MV G +   + G G+V PE    +  DI +   QM    HGD V+V   P G   RG
Sbjct: 75  HMKMVTGTLQVQRTGMGFVLPED--RRRTDIYVHPTQMGEAWHGDKVVVVLLPGG---RG 129

Query: 143 RK-EGRLVRILEERNGQIVGRFFFEYGYSYVV--PDDSRIH-HDILIPNDLRAGARMGNV 198
           R  EGR+VRILE    ++  R     G   ++    D+RI  H ++    L    +  ++
Sbjct: 130 RNPEGRIVRILERGLKEMPARVVKRMGRQGLLCRAADARIKVHFLVDVTGLEGKPQKDDI 189

Query: 199 VVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEE 258
           +V+   +R   +       V  LG      ++ ++    H +P E+P  V ++ A L   
Sbjct: 190 LVVSPGER-VEDGLWAATAVRHLGSEDDVSVQERLVKINHGVPTEFPVPVLEEAATLPPA 248

Query: 259 VPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTA 318
                   R+DLR +  VTIDG  ARDFDDA+ C  ++G GWRLWVAIADVS+YVRP +A
Sbjct: 249 PGGGDFADRIDLRHMEFVTIDGARARDFDDAI-CVEEQGKGWRLWVAIADVSHYVRPGSA 307

Query: 319 LDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHY 378
           +D+EA+ R NS YFP  V PMLPE LSNGLCSLNP+V RL MV E+     G     K Y
Sbjct: 308 MDREALERSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAEIYFFGEGSPGKCKFY 367

Query: 379 EAVMNSHARLTYTKVHE-ILEGDEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFE 437
            AV+ S ARLTY +V+  +L GDEE R   + ++P LE+  K+ +VL   R ERG+++F+
Sbjct: 368 PAVIESKARLTYGQVNRALLLGDEEERLVLRPVLPMLEQAEKLARVLHQRRRERGSLDFD 427

Query: 438 TVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYRVHEPPG 497
             E +  FN   +   I   VR+  H+++EE MI AN A A  + + +   LYRVH  P 
Sbjct: 428 LPEPEIAFNIYGETVDIRRKVRHFGHQIVEEFMIAANEAVARFLTEKEADFLYRVHPEPE 487

Query: 498 EERLTGFRDFLGELGLDLSGGL--EPSPTDYANLMKQIGERPDKELIQTMLLRSMKQAVY 555
            E+L+     L   G D++ GL  E S      ++++      + LI  + LR+M QA Y
Sbjct: 488 PEKLSALFKVLA--GTDIAQGLPREASAGALQTVLQKAHGSAQEFLISRLTLRTMMQARY 545

Query: 556 NADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPTGGYHYSFD 615
           + ++ GHFGLA   Y HFTSPIRRY DL++HRA+K  +    G      TP GG   +  
Sbjct: 546 SPEHEGHFGLASACYCHFTSPIRRYADLVVHRALKRALGGDPGP-----TPAGGKLVAIA 600

Query: 616 DMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELH 675
           D      Q S  ER+A +A RE+   L    ++  VGE L GV++++  FGFFV L E+ 
Sbjct: 601 D------QLSQHERKAMEAEREILKRLTVLLLRSRVGETLTGVISSILDFGFFVELNEVL 654

Query: 676 IDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQIDFELVE- 734
            DG+V +S+L +DYY + P  Q L GE  G  +RLG  VKV++  VN+   +++ ELV  
Sbjct: 655 ADGMVRLSSLDDDYYAFIPERQELRGERTGRTFRLGQQVKVRLADVNVGRLEVNLELVRE 714

Query: 735 --------TSRKLRGQGKTAKKRADEARAKAQGKKEAATK------------GACGKSPT 774
                   T R+    G+    R    R      +  AT              A G  P 
Sbjct: 715 EGDDTPVPTRRRSAASGRDGSGRDGSGRGGRGRSRHDATPRVKASPDASPEVSADGDMPD 774

Query: 775 KSELKPQVEATRRPDSEGRSKPKKTKAPKKRKD 807
              L P + A    D      P+ T   ++R+D
Sbjct: 775 GDRLPPWIRAATEEDD-----PRDTTRTRRRRD 802