Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 751 a.a., ribonuclease R (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  369 bits (947), Expect = e-106
 Identities = 256/752 (34%), Positives = 375/752 (49%), Gaps = 34/752 (4%)

Query: 23  PSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYAL 82
           P+++ +L ++       N+ ++  A  ++G  + + L+R L+ +E  G L   R++ Y  
Sbjct: 5   PTKDEVLAWIEDNPARANKREIARAFGIKGAARID-LKRLLKELEGKGHLE-KRKRSYRD 62

Query: 83  PEKLEMVKGYVIGHKDGHG--WVRP---EGSLNKEGDILLPHHQMRTLIHGDFVLVQPSG 137
           PE L  V    +G  DG G  + RP   +G+  +   +++P      L  GD +L + + 
Sbjct: 63  PESLPPVSVLKVGDADGDGDLFARPLDWQGAGAEPACLIIPRKGDPALAEGDRILARLTR 122

Query: 138 TDKRGRK-EGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPNDLRAGARMG 196
            +      E RL+R +     +I+G          +VP D     +  +      GA+ G
Sbjct: 123 VEGEDYAYEARLIRRIGTGPRKILGILRKTAEGGRIVPIDKGADREWRVAQGGLLGAQDG 182

Query: 197 NVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLT 256
           ++V  E      R    + +V +VLG+       + IAI  H I  E+P     +   +T
Sbjct: 183 DLVEAEQAGPKGRMGLPLARVTQVLGDPGGAKSVSLIAIHQHGILDEFPEAALAEAEAVT 242

Query: 257 EEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYC----EAKKGGGWRLWVAIADVSYY 312
              PE     R DLR LPL+TID  DARD DDAV      +    GG+ LWVAIADV+  
Sbjct: 243 --APELG--ARTDLRDLPLITIDPPDARDRDDAVCAIPDDDPANPGGFVLWVAIADVAAA 298

Query: 313 VRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKL 372
           VRP  ALD+EA  RGNS YFP +VVPMLP+ LS  LCSL+  VDR CM   M +   G  
Sbjct: 299 VRPGGALDREARKRGNSTYFPDRVVPMLPDSLSGDLCSLHEDVDRACMAVRMVIDAEGTK 358

Query: 373 SGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSARDERG 432
            G   +  +M S A L Y +V   ++GD   R     L P L  L   Y+ LK+AR  R 
Sbjct: 359 RGQTFHRGLMRSRASLAYGEVQAAVDGDPTERTE-PLLEPILRPLFAAYEALKAARARRQ 417

Query: 433 AIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYRV 492
            ++ +  E +   +   ++ S+    R + H+LIEE M+LAN+A+A  + K +   LYRV
Sbjct: 418 PLDLDLPERRIALSETGEVTSVAFRDRLEVHRLIEEFMVLANVAAAETLAKKRTPLLYRV 477

Query: 493 HEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLLRSMKQ 552
           HE P E +L   R+ +   GL L+ G      D   L+ Q     D ELI    LRSM Q
Sbjct: 478 HEEPAETKLDALRETVQAAGLTLAKGRVLRTADLNRLLAQAAGTDDAELINISTLRSMTQ 537

Query: 553 AVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPTGGYHY 612
           A Y+ +N GHFGLAL+ YAHFTSPIRRY DL++HRA    +    G  +D     G    
Sbjct: 538 AYYSPENFGHFGLALQNYAHFTSPIRRYADLIVHRA----LITAHGFGED-----GLSEA 588

Query: 613 SFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLT 672
             + +D  G+  S  ERR+  A R+  D     Y+ D VG E    ++ V  FG F RL 
Sbjct: 589 DIERLDETGKLISEAERRSMAAERDTIDRYLAAYLADRVGNEFSARISGVARFGAFARLD 648

Query: 673 ELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVL-------AVNLDD 725
           E   DGL+ I T+  +++H+D   Q LVG   G    +G  V V++         + L+ 
Sbjct: 649 ETGADGLIPIRTIGAEFFHFDADAQALVGSDTGFRLAMGQRVTVRLAEAVPVTGGIGLEL 708

Query: 726 RQIDFELVETSRKLRGQGKTAKKRADEARAKA 757
             ++ E V T R+ RG+ +  +++    +AKA
Sbjct: 709 LAVEDETVPTGRR-RGKSRPVRRKIAAKKAKA 739