Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 718 a.a., ribonuclease R (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  316 bits (809), Expect = 3e-90
 Identities = 203/642 (31%), Positives = 322/642 (50%), Gaps = 39/642 (6%)

Query: 105 PEGSLNKEGD-ILLPHHQMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRF 163
           PEG     GD I +        ++ D V +      K    EG ++ ILE  N   VG  
Sbjct: 103 PEGG----GDPIFVAERNSAHAMNNDKVKITFYAKRKNKDAEGEVIEILERANDTFVGTL 158

Query: 164 FFEYGYSYVVPDDSRIHHDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGE 223
                Y+++V ++  + +DI IP +   G + G+  ++++T+   + +  +G+V+++LG 
Sbjct: 159 EVAKSYAFLVTENRTLANDIFIPKEKLKGGKTGDKAIVKVTEWPDKAKNPIGQVIDILGV 218

Query: 224 NMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDA 283
                 E    +    +P+ +P  VE     +  E+  E    R D R +   TID +DA
Sbjct: 219 AGDNTTEMHAILAEFGLPYVYPKAVETAADKIPAEITPEEIARREDFRKVTTFTIDPKDA 278

Query: 284 RDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEV 343
           +DFDDA+     K G W + V IADV++YV+    +DKEA  R  SVY   + +PMLPE 
Sbjct: 279 KDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPER 338

Query: 344 LSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILE---GD 400
           L N +CSL P  ++L       ++E G++   +    V+NS  R TY +  +I+E   GD
Sbjct: 339 LCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTVINSDRRFTYEEAQQIIETKTGD 398

Query: 401 EELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRN 460
                 +K  V  L+ + K    L+  R   GAI F+  E KF  + + K  S+      
Sbjct: 399 ------FKEEVLMLDTIAK---ALREKRFAAGAINFDRYEVKFEIDEKGKPISVYFKESK 449

Query: 461 DAHKLIEECMILANIASASLV-----EKAKEAALYRVHEPPGEERLTGFRDFLGELGLDL 515
           DA+KL+EE M+LAN   A  V      K  +   YR+H+ P  E+L     F+   G  +
Sbjct: 450 DANKLVEEFMLLANRTVAEKVGRVPKNKKPKVLPYRIHDLPDPEKLENLSQFIARFGYKV 509

Query: 516 --SGGLEPSPTDYANLMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHF 573
             SG          +L+  I  + ++ LI+T+ +R+M++A Y+  N GH+GLA   Y HF
Sbjct: 510 RTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKARYSTHNIGHYGLAFDYYTHF 569

Query: 574 TSPIRRYPDLLLHRAI-KYLIAKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRAD 632
           TSPIRR+PD+++HR + KY+               GG   S    +   +  S  E+ A 
Sbjct: 570 TSPIRRFPDMMVHRLVTKYM--------------DGGRSVSESKYEDLCDHSSNMEQIAA 615

Query: 633 DATREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHY 692
           +A R    + + E+M + +G+  +GV++ VT +G +V L E   +G+V I  L +DYY +
Sbjct: 616 NAERASIKYKQVEFMSERLGQIYDGVISGVTEWGLYVELNENKCEGMVPIRDLDDDYYEF 675

Query: 693 DPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQIDFELVE 734
           D     L G     IY LGDA+ ++V   NL+ +Q+DF L+E
Sbjct: 676 DEKNYCLRGRRKNKIYSLGDAITIRVARANLEKKQLDFALIE 717