Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

 Score =  927 bits (2395), Expect = 0.0
 Identities = 466/813 (57%), Positives = 587/813 (72%), Gaps = 15/813 (1%)

Query: 8   DPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAME 67
           DP  +RE D Y+NPIPSREYI+E+L     P+ R+ +  AL++  EEQ E LRRRLRAME
Sbjct: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAME 63

Query: 68  RDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEG--DILLPHHQMRTL 125
           RDG+LVFTR Q Y LPEK++++ G V+GH++G+G+ +P+     EG  D+ + +  M   
Sbjct: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPD-----EGGDDLFISNRDMLMY 118

Query: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI 185
            HGD VL Q +G D++GR+E R+VR+++ R+  IVGRF  + G ++V+ DD RI  +ILI
Sbjct: 119 FHGDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILI 178

Query: 186 PNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWP 245
             + R GAR G+VVV+E+T R  R     GKV EVLG+ MAPGME +IA+R + +PH W 
Sbjct: 179 ATEDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWS 238

Query: 246 AEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVA 305
           A +E+++  + +EV E  K GRVDLR LPLVTIDGEDARDFDDAVY E K  GGWRLWVA
Sbjct: 239 AVIEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVA 298

Query: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365
           IADVSYYVR D+ALD EA  RGNSVYFPSQV+PMLPE +SNGLCSLNP VDRLCMV EMT
Sbjct: 299 IADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMT 358

Query: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425
           +S  GKLSGYK Y AVM+SHAR TYT+V  +LEG   +   ++AL PHL+ L  +Y  L 
Sbjct: 359 ISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGP-IAPEHEALFPHLQCLQSLYLALD 417

Query: 426 SARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAK 485
             R ERGAI FET+ET+FIFN QRKI+ I P  RN AHK+IEECMILAN+++A  V+K K
Sbjct: 418 EQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHK 477

Query: 486 EAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTM 545
              LYRVHE P E++L  F++FL E GL + GGLEP+P DY N+M QI +RPD ELIQ M
Sbjct: 478 GEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVM 537

Query: 546 LLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWT 605
           LLRSM+QA+Y  DN GHFGLAL+ YAHFTSPIRRYPDL+LHR I+YL+AK++G   ++WT
Sbjct: 538 LLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWT 597

Query: 606 PTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSF 665
             GGYHY  D++D  GE+CS TERRAD+ATR+VSDWLKCE+MQDHVG+  E V+A+VT+F
Sbjct: 598 SDGGYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNF 657

Query: 666 GFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDD 725
           G FVRL +L IDGLVHIS+L +DYY +DP+ QRL+GE  G IY++GD V VKV AVNLDD
Sbjct: 658 GLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDD 717

Query: 726 RQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGKSP-TKSELKPQVEA 784
           RQID  ++  S K  G+ K+A  R     A+ +  +E A      KS   KS+       
Sbjct: 718 RQIDLVMLGDSGK-GGRRKSAPSREKPMTARERVNREGAKMAKAAKSTGAKSKAGSDKAG 776

Query: 785 TRRPDSEGRSKPKKT-----KAPKKRKDQARKK 812
             +  S+  +KPKK+     K PK  K   RKK
Sbjct: 777 ASKSKSKAGAKPKKSVKNSAKKPKAAKRSTRKK 809