Pairwise Alignments

Query, 247 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Vibrio cholerae E7946 ATCC 55056

Subject, 519 a.a., RNA methyltransferase TrmH, group 3 from Synechococcus elongatus PCC 7942

 Score =  179 bits (455), Expect = 8e-50
 Identities = 96/245 (39%), Positives = 147/245 (60%), Gaps = 7/245 (2%)

Query: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62
           +ELIYG HAV A LQ +          + R +   L +++     G  + E+  + +   
Sbjct: 241 HELIYGRHAVLAALQGNRTLNRIWVTPRLRYESTFLELIDAAKAGGAVVDEVPVERIRQL 300

Query: 63  AEGANHQGLIARVKPARQLNENDLDDILAQHE----QPLLLVLDGVTDPHNLGACLRNAD 118
            +GA HQG+ A+V P       +L D++AQ +     P+++V DG+TDPHNLGA +R A+
Sbjct: 301 TDGAVHQGIAAQVAPYPY---QELSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAE 357

Query: 119 AAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGE 178
           A G   +++P+ ++  +TA V+KVA GA E+ P+ RV NL R +  L++ G W  G AGE
Sbjct: 358 ALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARVVNLNRALEELKDAGFWIYGAAGE 417

Query: 179 ATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFE 238
           A   I+++  +G + +V+G+E +G+  LTRE CD LI IP+ G  +SLN SVA G+ L+E
Sbjct: 418 AKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYE 477

Query: 239 AVRQR 243
             RQR
Sbjct: 478 VSRQR 482