Pairwise Alignments

Query, 247 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., tRNA/rRNA methyltransferase (SpoU) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 86.7 bits (213), Expect = 6e-22
 Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 66  ANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAV 125
           ++HQG+IARV  A      D+         PL++ LD V DP N+G   R   A G A +
Sbjct: 154 SSHQGVIARVFDAGFAEFGDILRDAPDAPLPLIVALDQVQDPGNVGTLARTLYALGAAGL 213

Query: 126 IVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV----------GT 175
           +V +   A L    ++ A GA E +P+ +VTNLAR +    E G              G 
Sbjct: 214 VVVRHGGAALGGAAARAAAGALEKLPVAKVTNLARALDEADEAGYTIYAAGGAAPETDGK 273

Query: 176 AGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVC 235
            G    + +   L     +V+G E  G+R    + C   + IPMA    SLNV+ A  + 
Sbjct: 274 PGSGPRNPFTEPLRTPAVLVLGNEDSGIRPNVAKRCHFTLSIPMARDFDSLNVAQAGAIL 333

Query: 236 L--FEAVRQR 243
           +  F A RQ+
Sbjct: 334 VGCFAARRQK 343



 Score = 23.1 bits (48), Expect = 0.008
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 5  LIYGIHAVNAVLQRDPARFVEAYVLK---GRQDDRLLPVLNE 43
          ++ G+  V  +L+ DP+R     + K   GR+ DR++ +  E
Sbjct: 19 ILPGVKPVLELLESDPSRVETVLIRKGKRGREVDRIVELCRE 60