Pairwise Alignments

Query, 247 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  327 bits (839), Expect = 1e-94
 Identities = 161/240 (67%), Positives = 195/240 (81%)

Query: 4   ELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDKA 63
           ++I+GIHAV A+L+  P R +E ++L+GR+D+RL P++ +    G SIQ  SRK LD+KA
Sbjct: 5   DIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLDEKA 64

Query: 64  EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVA 123
           E   HQG++ARVK A+ L E+DLD++LA+ + P LL+LDGVTDPHNLGACLRNADAAGV 
Sbjct: 65  ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 124 AVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDI 183
            +IVPKD S  LTA VSKVACGAAETVPL +VTNLARTMR LQEKGVW VGTAGEA  ++
Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184

Query: 184 YQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 243
           YQ+ L G LAI MGAEG G+RRL+RE CD L+ IPM+GSVSSLNVSVA G+CLFEAVRQR
Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEAVRQR 244