Pairwise Alignments

Query, 247 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., RNA methyltransferase, TrmH family, group 3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  112 bits (281), Expect = 5e-30
 Identities = 79/233 (33%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 8   GIHAVNAVLQRDPARFVEAYVLKGRQD---DRLLPVLNELMRLGVSIQEMSRKALDDKAE 64
           G+  V  +L  DPAR    ++ +GR+    DRL+ +  E MR+  S+ E     + DK  
Sbjct: 10  GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCRE-MRVRFSLVEGQ---VLDKLY 65

Query: 65  GANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAA 124
              HQG++AR+  A  +  +DL         PL++ LD V DP N G   R+  A G A 
Sbjct: 66  AGGHQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAG 125

Query: 125 VIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGT-AGEATHDI 183
           +IVP+  +A L A   + A GA E +P+ RV NLAR +    E G    G   GE + + 
Sbjct: 126 LIVPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNA 185

Query: 184 YQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCL 236
           + + L     +V+G E  G+R    + CD L+ IPM     S NV+ A  + L
Sbjct: 186 FTATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238