Pairwise Alignments

Query, 233 a.a., 30S ribosomal protein S3 from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., 30S ribosomal protein S3 (RefSeq) from Shewanella amazonensis SB2B

 Score =  365 bits (936), Expect = e-106
 Identities = 180/232 (77%), Positives = 207/232 (89%), Gaps = 2/232 (0%)

Query: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLSKELANASLSRIVIERP 60
           MGQKVHPNGIRLGI KPW +TW+A+  D+A+NL  D++VR++L K+L  AS+S+IVIERP
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLHSDWEVRKFLEKKLEAASVSKIVIERP 60

Query: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120
           AKSIRVTIHTARPGVVIGKKGEDVE LRA VAKI+G PAQINIAE+RKPELD +LVADSI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEVLRAEVAKISGTPAQINIAEIRKPELDAKLVADSI 120

Query: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180
           A QLERRVMFRRAMKRAVQNAMR+GA+GIKVEVSGRLGGAEIAR+EWYREGRVPLHTLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 DIDYATSSAHTTYGVIGVKVWIFKGEILGGMPAATEAAEPKADKPKKQRKGR 232
           DIDYATS +HTTYGVIG+KVW+FKGE+L GM    E  EPK  +PK++ +G+
Sbjct: 181 DIDYATSESHTTYGVIGIKVWVFKGEVLDGMLPQVE--EPKQQQPKRKPRGK 230