Pairwise Alignments

Query, 233 a.a., 30S ribosomal protein S3 from Vibrio cholerae E7946 ATCC 55056

Subject, 211 a.a., 30S ribosomal protein S3 from Methanococcus maripaludis JJ

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 4/172 (2%)

Query: 39  VRQYLSKELANASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVP 98
           + +Y   +L  A  S I  ++     R+T+   +PG VIG+KG+ V++L   +A    V 
Sbjct: 16  IDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVK 75

Query: 99  -AQINIAEVRKPELDGQLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRL 157
             QI + +V  P+LD  +V   IAS LER + FR+    A++  M  GAKG+ + VSG+L
Sbjct: 76  NPQIEVKQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKL 135

Query: 158 GGAEIARSEWYREGRVPL--HTLRADIDYATSSAHTTYGVIGVKVWIFKGEI 207
            G E +R+E + +G +        A ++ +   A    G++GV V I + ++
Sbjct: 136 SG-ERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIMRPDV 186