Pairwise Alignments

Query, 444 a.a., protein translocase subunit SecY from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., preprotein translocase SecY subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  322 bits (826), Expect = 1e-92
 Identities = 173/432 (40%), Positives = 269/432 (62%), Gaps = 11/432 (2%)

Query: 16  LSELKSRLFFVIGALLVFRAGSFVPIPGIDAAVLAELFEQQKGTIVEMFNMFSGGALERA 75
           + +L+ R+   I  + ++R GS+V +PGI+ A+LA+L EQ    ++ + NMFSGGA   A
Sbjct: 14  IEDLRQRILITILFVAIYRFGSYVVLPGINPAMLAKLHEQTSEGLLALLNMFSGGAFSNA 73

Query: 76  SILALGIMPYISASIVVQLLTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGI 135
           SI ALGIMPYISASIV+QLL +  P   +L++EGE+GRRK++QYTRY T+ +   QA   
Sbjct: 74  SIFALGIMPYISASIVIQLLGIAVPYFQKLQREGESGRRKMNQYTRYLTIAILLVQAPSY 133

Query: 136 ATGLPNMVNNLV--VIDQTMFTLIATVSLVTGTMFLMWLGEQITERGIGNGISILIFAGI 193
              L       +   +D T+F + +T+ L  G+MF++WLGE+IT++GIGNGIS +I  GI
Sbjct: 134 LLNLKMQAGPSLNASLDWTLFMVTSTIILAAGSMFILWLGERITDKGIGNGISFIILIGI 193

Query: 194 VAGLPKAIGQTIEQARQGELHVLLLLLI-AVLAFAVIYFVVFMERGQRRIVVNYAKRQQG 252
           +A  P A+ Q +      +   L++ +I  V    VI   + + +G R+I V YAKR  G
Sbjct: 194 IARFPDALIQEVVSRVANKSGGLIMFIIEVVFLLLVIGAAILLVQGTRKIPVQYAKRIVG 253

Query: 253 RKVFAAQSTHLPLKINMAGVIPAIFASSIILFPGTLAQWFGQNGESSTFGWLTDVSLALS 312
            K +     ++PLK+N AGV+P IFA +I+  P T   +   N  ++  G+L   +   S
Sbjct: 254 NKQYGGARQYIPLKVNAAGVMPIIFAQAIMFIPITFIGF--SNNVNNAGGFLHAFTDHTS 311

Query: 313 PGQPLYVMLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMT 372
                Y  ++A  II F +FYTA+  NP + A+++K++  F+PGI+PG++TA+YID +M+
Sbjct: 312 ---FWYNFVFAVMIILFTYFYTAITINPTQMAEDMKRNNGFIPGIKPGKKTAEYIDDIMS 368

Query: 373 RLTLAGALYITFICLIPEF---MMVAWNVRFYFGGTSLLIVVVVIMDFMAQVQTHLMSHQ 429
           R+TL G+ ++  + ++P F     V      +FGGTSLLI+V V++D + QV++HL+   
Sbjct: 369 RITLPGSFFLALVAIMPAFAGIFGVQAGFAQFFGGTSLLILVGVVLDTLQQVESHLLMRH 428

Query: 430 YESVLKKANLKG 441
           Y+ +LK   +KG
Sbjct: 429 YDGLLKSGRIKG 440