Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type from Pseudomonas stutzeri RCH2

 Score =  457 bits (1177), Expect = e-133
 Identities = 236/330 (71%), Positives = 277/330 (83%), Gaps = 2/330 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           MQ SV EFL PR +D++ +S T AK+TLEPLERGFGHTLGNALRRILLSSMPGCAV E E
Sbjct: 1   MQSSVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHEYS  EGVQED++EILLNLKG+A+++  G+DEV ++L K G+G V A DI  D 
Sbjct: 61  IDGVLHEYSAIEGVQEDVIEILLNLKGIAIKL-HGRDEVTLSLVKKGAGAVTAADIQLDH 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           DVEIVN +H+I +L + N ++ M++KV RGRGY PA AR   E++ R IGRL +DATFSP
Sbjct: 120 DVEIVNGDHLIANLAA-NGSLNMKLKVARGRGYEPADARQSDEDESRSIGRLQLDATFSP 178

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V ++AY VE ARVEQRT+LDKLVID+ETNGTL+PEEAIRRAATIL +QL AFVDL+    
Sbjct: 179 VRRVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSE 238

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
           P   E++ E DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTEVELLKTPNLGKKS
Sbjct: 239 PVVIEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKS 298

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIAED 330
           LTEIKDVLASRGLSLGMRL+NWPPAS+ +D
Sbjct: 299 LTEIKDVLASRGLSLGMRLDNWPPASLKKD 328