Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., DNA-directed RNA polymerase subunit alpha from Synechocystis sp000284455 PCC 6803

 Score =  190 bits (483), Expect = 3e-53
 Identities = 109/296 (36%), Positives = 182/296 (61%), Gaps = 11/296 (3%)

Query: 23  HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGVLHEYSTKEGVQEDILEIL 82
           ++K +LEPL+RG G T+GNALRR+LLS++PG AVT + I GV HE++T  GV+ED+LEI+
Sbjct: 20  YSKFSLEPLDRGQGTTVGNALRRVLLSNLPGAAVTAIRIAGVNHEFATILGVREDVLEIM 79

Query: 83  LNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEIVNPEHVICHLTSDNAAIA 142
           LN+K L ++    + ++   L   G G V A       +VE+++P   I  L ++ A + 
Sbjct: 80  LNMKELVLKSYTDQPQIG-RLTAIGPGTVTAAQFEVPSEVEVIDPNQYIATL-AEGAKLE 137

Query: 143 MRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKIAYSVEAARVEQRTDLDKL 202
           M  +VERG GY         +++   +  L +D+ F PV K+ Y+VE  R +  +  D+L
Sbjct: 138 MEFRVERGVGYRVIE---RGKDENSSLDFLQIDSVFMPVTKVNYTVEDIRADGMSPKDRL 194

Query: 203 VIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPE--EKEEKPEFDPILLRPVDD 260
           ++D+ TNG+++P EA+  A+ I+A   + F+ L+D+   E    + + E +P    P+++
Sbjct: 195 ILDIWTNGSIQPREALSEASDIIA---NLFIPLKDLNELEAAHSDYQDEVNPESQIPIEE 251

Query: 261 LELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR-GLSL 315
           L+L+VR+ NCLK   I+ + DL++ ++ +LL+  N G KS  E+ + L  R G++L
Sbjct: 252 LQLSVRAYNCLKRAQINSVADLLEYSQEDLLEIKNFGLKSAEEVIEALQKRLGITL 307