Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., DNA-directed RNA polymerase subunit alpha from Synechococcus elongatus PCC 7942

 Score =  202 bits (513), Expect = 1e-56
 Identities = 117/293 (39%), Positives = 178/293 (60%), Gaps = 8/293 (2%)

Query: 23  HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGVLHEYSTKEGVQEDILEIL 82
           + + ++EPL RG G T+GNALRR+LLS++ G AVT V I GV HE++T  GV+ED+L+IL
Sbjct: 19  YGRFSIEPLARGQGTTVGNALRRVLLSNLEGTAVTAVRIGGVNHEFATIPGVREDVLDIL 78

Query: 83  LNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEIVNPEHVICHLTSDNAAIA 142
           LN++ L V     + ++   L   G   V A D+    +VE++NP H I  L S+ A + 
Sbjct: 79  LNVRELVVHAHSPQPQIG-RLRVVGPATVTAADVDFGPEVEVINPNHYIASL-SEGATLE 136

Query: 143 MRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKIAYSVEAARVEQRTDLDKL 202
           M +KVE G GY    A   + ++   +  L +DA F PV ++ YSVE ARV + T +D+L
Sbjct: 137 MELKVEWGTGY---RAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARVGESTAIDRL 193

Query: 203 VIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPEEKEEKPEFDPILLRPVDDLE 262
           V+++ TNG+L P+EA+ +AA+ L   +  F  L++V V       PE  P    P++DL+
Sbjct: 194 VLEVWTNGSLSPQEALSQAASCL---VALFEPLKNVSVGSTHTADPEPTPESQTPIEDLQ 250

Query: 263 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 315
           L+VR+ NCLK   ++ + DL+  T  +LL+  N G+KS  E+ + L   G+ L
Sbjct: 251 LSVRAYNCLKRAQVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALERIGIKL 303