Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., DNA-directed RNA polymerase subunit alpha from Sinorhizobium meliloti 1021

 Score =  307 bits (786), Expect = 3e-88
 Identities = 165/331 (49%), Positives = 225/331 (67%), Gaps = 7/331 (2%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           +Q +  E +KP  V+      T A +  EPLERGFG TLGNALRR+LLSS+ G AVT V+
Sbjct: 2   IQKNWQELIKPNKVEFASSGRTKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAVQ 61

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHE+S+  GV+ED+ +I+LN+K +A+++ +G D   + + K G G V AGDI   G
Sbjct: 62  IDGVLHEFSSIPGVREDVTDIVLNIKEIAIKM-DGDDAKRMVVRKQGPGVVTAGDIQTVG 120

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           D+EI+NP HVIC L  + A I M   V  G+GYVPA        ++ PIG + VD+ +SP
Sbjct: 121 DIEILNPNHVICTL-DEGAEIRMEFTVNNGKGYVPAD---RNRSEDAPIGLIPVDSLYSP 176

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V K++Y VE  R  Q  D DKL + +ET+G++  E+AI  AA IL +QL  FV+  + + 
Sbjct: 177 VKKVSYKVENTREGQVLDYDKLTMSIETDGSVTGEDAIAFAARILQDQLSVFVNFDEPQK 236

Query: 241 PEEKEEKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 298
             E+E   E  F+P LL+ VD+LEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+
Sbjct: 237 ETEEEAVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296

Query: 299 KSLTEIKDVLASRGLSLGMRLENWPPASIAE 329
           KSL EIK+VLAS GL LGM + +WPP +I +
Sbjct: 297 KSLNEIKEVLASMGLHLGMEVPSWPPENIED 327