Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha (RefSeq) from Shewanella amazonensis SB2B

 Score =  565 bits (1455), Expect = e-166
 Identities = 288/330 (87%), Positives = 310/330 (93%), Gaps = 2/330 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           MQGSVTEFLKPRLVDIEQ+S T AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
Sbjct: 1   MQGSVTEFLKPRLVDIEQVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHEYS+KEGVQEDILEILLNLKGLAV + EGKDE  +TL+KSG+GPV A DITHDG
Sbjct: 61  IDGVLHEYSSKEGVQEDILEILLNLKGLAV-ILEGKDEAMLTLSKSGAGPVTAADITHDG 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           DV I NP+HVICHLT  N  I+MRI+VERGRGYVPASAR   E+D+RPIGRLLVDA+FSP
Sbjct: 120 DVTIANPDHVICHLTG-NHDISMRIRVERGRGYVPASARAQNEDDDRPIGRLLVDASFSP 178

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V +IAY+VEAARVEQRTDLDKLVIDM TNGT++PEEAIRR+ATILAEQLDAFV+LRDV V
Sbjct: 179 VARIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVSV 238

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
           PE+KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
Sbjct: 239 PEQKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 298

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIAED 330
           LTEIKDVLASRGLSLGMRLENWPPAS+A+D
Sbjct: 299 LTEIKDVLASRGLSLGMRLENWPPASLADD 328