Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-directed RNA polymerase, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  303 bits (777), Expect = 3e-87
 Identities = 166/334 (49%), Positives = 232/334 (69%), Gaps = 11/334 (3%)

Query: 1   MQGSVTEFLKPRLVDIEQI--STTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58
           +Q +  E +KP  + IE +  S   A V  EPLERGFG TLGNALRR+LLSS+ G AVT 
Sbjct: 4   IQKNWQELIKPNKLMIELVGGSKKVATVVAEPLERGFGLTLGNALRRVLLSSLQGAAVTA 63

Query: 59  VEIEGVLHEYSTKEGVQEDILEILLNLKGLAVRV-AEGKDEVFITLNKSGSGPVVAGDIT 117
           ++IEGVLHE+S+  GV+ED+ +++LN+KGLA+ + +EG   +  TL  SG G V A  I 
Sbjct: 64  IQIEGVLHEFSSIPGVREDVTDVILNIKGLALLMHSEGPRRM--TLKASGPGEVTAAQIE 121

Query: 118 HDGDVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDAT 177
              D+EI+NP+ VICHL  + A ++M   V  G+GYVP++       ++ PIG + +D+ 
Sbjct: 122 MGSDIEIMNPDLVICHL-DEGATLSMEFTVGMGKGYVPST---QNRPEDAPIGYIPIDSI 177

Query: 178 FSPVDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRD 237
           FSPV K++Y VE +RV Q TD DKL + +ET+G++ PE+A+  AA IL +QL  F++  +
Sbjct: 178 FSPVTKVSYRVENSRVGQVTDYDKLSMVVETDGSVGPEDAVALAARILQDQLQLFINFEE 237

Query: 238 VRV--PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 295
            +    E+K+++  F+  LLR VD+LEL+VRSANCLK + I YIGDLVQ+TE E+L+TPN
Sbjct: 238 PQAVSEEKKDDELPFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPN 297

Query: 296 LGKKSLTEIKDVLASRGLSLGMRLENWPPASIAE 329
            G+KSL EIK+VLA  GL LGM + NWPP +I +
Sbjct: 298 FGRKSLNEIKEVLAQMGLHLGMEISNWPPENIED 331