Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., DNA-directed RNA polymerase subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  293 bits (750), Expect = 4e-84
 Identities = 152/327 (46%), Positives = 225/327 (68%), Gaps = 9/327 (2%)

Query: 7   EFLKPRLVDIEQIS--TTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGV 64
           E +KP  +D++  +     A V  EPLERGFG TLGNALRR+L+SS+ G A+T V+I+ V
Sbjct: 8   ELIKPTQLDVKPGNDPARQATVVAEPLERGFGLTLGNALRRVLMSSLQGAAITSVQIDNV 67

Query: 65  LHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEI 124
           LHE+S+  GV+ED+ +I+LNLKG+++R+ E +    +++N  G   V AGDI+    +E+
Sbjct: 68  LHEFSSVAGVREDVTDIILNLKGVSLRM-EVEGPKRLSINAKGPAVVTAGDISESAGIEV 126

Query: 125 VNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKI 184
           +N EHVICHL  D A + M + V  G+GYV A      + ++ PIG + +DA +SPV K+
Sbjct: 127 LNREHVICHL-DDGADLFMELTVNTGKGYVSADKN---KPEDAPIGLIPIDAIYSPVKKV 182

Query: 185 AYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPEEK 244
           +Y V+  R  Q  D DKL + +ET+G++ P++A+  AA I+ +QL  FV+  +      +
Sbjct: 183 SYDVQPTREGQVLDYDKLTMKIETDGSITPDDAVAYAARIVQDQLSIFVNFDEPESANRQ 242

Query: 245 EEKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 302
           ++    EF+P+LL+ VD+LEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+KSL 
Sbjct: 243 DDDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN 302

Query: 303 EIKDVLASRGLSLGMRLENWPPASIAE 329
           EIK+VL+  GL LGM +E+WPP +I +
Sbjct: 303 EIKEVLSGMGLHLGMDVEDWPPDNIED 329