Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score =  564 bits (1453), Expect = e-165
 Identities = 287/330 (86%), Positives = 312/330 (94%), Gaps = 2/330 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           MQGSVTEFLKPRLVDIEQ++ T AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
Sbjct: 1   MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHEYS+KEGVQEDILEILLNLKGLAV V EGKDE  +TL+KSG+GPV A DITHDG
Sbjct: 61  IDGVLHEYSSKEGVQEDILEILLNLKGLAV-VIEGKDEAMLTLSKSGAGPVTAADITHDG 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           DV I+NP+HVICHLT +N  I+MRI+VERGRGYVPASAR  TE+D+RPIGRLLVD++FSP
Sbjct: 120 DVTIMNPDHVICHLTGNND-ISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDSSFSP 178

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V +IAY+VEAARVEQRTDLDKLVIDM TNGT++PEEAIRR+ATILAEQLDAFV+LRDV  
Sbjct: 179 VARIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTE 238

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
           PE+KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
Sbjct: 239 PEQKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 298

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIAED 330
           LTEIKDVLASRGLSLGMRLENWPPAS+A+D
Sbjct: 299 LTEIKDVLASRGLSLGMRLENWPPASLADD 328