Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., DNA-directed RNA polymerase, alpha subunit from Dechlorosoma suillum PS

 Score =  402 bits (1034), Expect = e-117
 Identities = 205/322 (63%), Positives = 256/322 (79%), Gaps = 4/322 (1%)

Query: 6   TEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGVL 65
           T  LKPR++D++ +S   A+V +EP ERG+GHTLGNALRRILLSSMPG A T+V I+GVL
Sbjct: 4   TGLLKPRIIDVQSLSPVQARVVMEPFERGYGHTLGNALRRILLSSMPGYAPTDVSIDGVL 63

Query: 66  HEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEIV 125
           HEYST +GVQED+++ILLNLKG+  ++  G+DEV + L+K G G V A DI    DVEI+
Sbjct: 64  HEYSTIDGVQEDVVDILLNLKGIVFKL-HGRDEVVLKLSKDGEGIVRASDIETTHDVEII 122

Query: 126 NPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKIA 185
           NP+HVI H++S    ++M IKVE+GRGYVP + R     D + IG+L++DA+FSPV +++
Sbjct: 123 NPDHVIAHISS-GGKLSMEIKVEKGRGYVPGTMR--NLGDTKNIGQLVLDASFSPVRRVS 179

Query: 186 YSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPEEKE 245
           Y VE+ARVEQRTDLDKLV+D+ETNG +EPEEAIR AA IL EQL  F DL       E +
Sbjct: 180 YLVESARVEQRTDLDKLVMDIETNGVIEPEEAIRTAARILMEQLSVFADLEGTAPMVEAQ 239

Query: 246 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 305
           +  + DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTE ELLKTPNLG+KSL EIK
Sbjct: 240 KPVQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIK 299

Query: 306 DVLASRGLSLGMRLENWPPASI 327
           +VLA+RGL+LGM+LENWPPA +
Sbjct: 300 EVLAARGLTLGMKLENWPPAGL 321