Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., Probable DNA-directed RNA polymerase (alpha chain) RpoA (transcriptase alpha chain) (RNA polymerase alpha subunit) (DNA-directed RNA nucleotidyltransferase) from Mycobacterium tuberculosis H37Rv

 Score =  243 bits (621), Expect = 4e-69
 Identities = 138/314 (43%), Positives = 191/314 (60%), Gaps = 10/314 (3%)

Query: 19  ISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGVLHEYSTKEGVQEDI 78
           ++   ++  +EPLE GFG+TLGN+LRR LLSS+PG AVT + I+GVLHE++T  GV+ED+
Sbjct: 14  LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDV 73

Query: 79  LEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEIVNPEHVICHLTSDN 138
            EI+LNLK L V  +E  + V + L K G G V AGDI     V + NP   I  L +D 
Sbjct: 74  TEIILNLKSLVVS-SEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATL-NDK 131

Query: 139 AAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKIAYSVEAARVEQRTD 198
             + + + VERGRGYVPA   +        IGR+ VD+ +SPV K+ Y V+A RVEQRTD
Sbjct: 132 GKLEVELVVERGRGYVPA---VQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTD 188

Query: 199 LDKLVIDMETNGTLEPEEAIRRAATILAEQL----DAFVDLRDVRVPEEKEEKPEFDPIL 254
            DKL++D+ET  ++ P +A+  A   L E      +  V+   + +     E        
Sbjct: 189 FDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFA 248

Query: 255 LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 314
           L P+DDL+LTVRS NCLK E +H +G+LV RTE +LL   N G+KS+ E+K  L   GLS
Sbjct: 249 L-PIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLS 307

Query: 315 LGMRLENWPPASIA 328
           L     ++ P+ +A
Sbjct: 308 LKDSPPSFDPSEVA 321