Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., DNA-directed RNA polymerase subunit alpha (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  233 bits (593), Expect = 7e-66
 Identities = 135/324 (41%), Positives = 203/324 (62%), Gaps = 14/324 (4%)

Query: 6   TEFLKPRLV--DIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEG 63
           +E +KP  +  D +     + K   EPLERG+G T+GNALRR+LLSS+ G A   V++ G
Sbjct: 16  SELVKPEQITRDSDPADAMYGKFVCEPLERGYGTTIGNALRRVLLSSLQGAAFVSVKVSG 75

Query: 64  VLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDE-VFITLNKSGSGPVVAGDITHDGDV 122
           V HE++T  GV ED+ +I+LNLK   VR+A   DE  F+ L+ +  G V AGDI  +  V
Sbjct: 76  VQHEFTTIPGVLEDVTDIVLNLK--QVRLAMDTDEPQFLELSVNKKGAVKAGDIKTNQHV 133

Query: 123 EIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVD 182
            ++NP+  I  LT D   +    +V  G+GYVPA       E+   IG + +D++F+PV 
Sbjct: 134 MVLNPDLHIATLTED-LELTFEFEVRMGKGYVPADMHEGLSEE---IGLIKLDSSFAPVR 189

Query: 183 KIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPE 242
           K+AY+VE ARV Q T+ DKL+I++ T+G++ PE+AI  +A I+ +Q+  F++  D R+  
Sbjct: 190 KVAYTVEQARVGQMTNYDKLIIEVWTDGSVTPEDAIAYSAKIIKDQISVFINF-DERISG 248

Query: 243 E----KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 298
           E         + +  L + +D+LEL+VR+ NCLK+  I  +G+LVQ++E E+LKT N G+
Sbjct: 249 ESSGNSSGSSDVNENLFKGIDELELSVRATNCLKSANITLVGELVQKSENEMLKTKNFGR 308

Query: 299 KSLTEIKDVLASRGLSLGMRLENW 322
           KSL EIK VL    L  GM+++ +
Sbjct: 309 KSLDEIKRVLCDMSLDFGMKVDGF 332