Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., DNA-directed RNA polymerase, alpha subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  287 bits (734), Expect = 3e-82
 Identities = 155/330 (46%), Positives = 222/330 (67%), Gaps = 15/330 (4%)

Query: 7   EFLKPRLVDIEQIS--TTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGV 64
           E +KP  ++++  +     A V  EPLERGFG TLGNALRR+L+SS+ G A+T V+I+ V
Sbjct: 13  ELIKPTQLEVKPGNEPARQATVVAEPLERGFGLTLGNALRRVLMSSLQGAAITSVQIDNV 72

Query: 65  LHEYSTKEGVQEDILEILLNLKGLAVRV-AEGKDEVFITLNKSGSGP--VVAGDITHDGD 121
           LHE+S+  GV+ED+ +I+LNLK +A+R+  EG   V I    S  GP  V AGDI+    
Sbjct: 73  LHEFSSVAGVREDVTDIVLNLKQVAIRMEVEGPKRVSI----SAKGPRVVTAGDISESAG 128

Query: 122 VEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPV 181
           +E++N +HVICHL  + A + M + V  G+GYV A        ++ PIG + +DA FSPV
Sbjct: 129 IEVLNRDHVICHL-DEGADLFMELIVNTGKGYVSADKN---RPEDAPIGLIPIDAIFSPV 184

Query: 182 DKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVP 241
            K++Y V+  R  Q  D DKL + +ET+G++ P++A+  AA IL +QL  FV+  +    
Sbjct: 185 KKVSYDVQPTREGQVLDYDKLTLKLETDGSVTPDDAVAYAARILQDQLSVFVNFDEPEAA 244

Query: 242 EEKEEKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 299
             + E+   EF+P+LL+ VD+LEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+K
Sbjct: 245 RSQSEEDDLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRK 304

Query: 300 SLTEIKDVLASRGLSLGMRLENWPPASIAE 329
           SL EIK+VL+  GL LGM + +WPP +I +
Sbjct: 305 SLNEIKEVLSGMGLHLGMDILDWPPENIED 334