Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

 Score =  318 bits (814), Expect = 2e-91
 Identities = 167/328 (50%), Positives = 227/328 (69%), Gaps = 11/328 (3%)

Query: 7   EFLKPRLVDIEQ--ISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGV 64
           E ++P    IE    +T  A++  EPLERGFG TLGNALRR+LLSS+ G AVT ++I+GV
Sbjct: 8   ELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDGV 67

Query: 65  LHEYSTKEGVQEDILEILLNLKGLAVRV-AEGKDEVFITLNKSGSGPVVAGDITHDGDVE 123
           +HE+S+ EGV+ED+++I+LN+K LAVR+ AEG   +  TL  +G GPV AG I    D+E
Sbjct: 68  VHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRM--TLRATGPGPVTAGQIETPADIE 125

Query: 124 IVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDK 183
           I+NP+HV+C L  D A++ M   V  G+GYVPA        ++ PIG + VDA +SPV +
Sbjct: 126 ILNPDHVLCTL-DDGASVRMEFTVNNGKGYVPAD---RNRPEDAPIGLIAVDALYSPVKR 181

Query: 184 IAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPEE 243
           +AY VE  R  Q  D DKL++++ETNG + P +A+  AA IL +QL  F+   + +    
Sbjct: 182 VAYRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSA 241

Query: 244 KEEKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 301
            E KPE  F+P LL+ VD+LEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+KSL
Sbjct: 242 DESKPELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSL 301

Query: 302 TEIKDVLASRGLSLGMRLENWPPASIAE 329
            EIK+VLA  GL LGM + NWPP +I +
Sbjct: 302 NEIKEVLAGMGLHLGMDVPNWPPENIED 329