Pairwise Alignments

Query, 269 a.a., EamA family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (379), Expect = 3e-41
 Identities = 89/278 (32%), Positives = 151/278 (54%), Gaps = 31/278 (11%)

Query: 3   PVALAVWLLVLGNLAASLSDVAVKMLQGEVVPFQYMFLRQLFAFALIWPVWRKQPKVLRQ 62
           PV + + LL++GNL ++  DV++K L  +     ++ +RQ+ +  ++ P+W    +   Q
Sbjct: 4   PVVIGLILLIVGNLFSAFYDVSIKWLPEDANAATFLLVRQITSVLMLTPIWLYSQRP--Q 61

Query: 63  LNDPKVTLIRAHLVLLGAGCMVVAISYLPLATANAVFYAAPLLMLPLSILFLKERPSRGK 122
                V L RA++  +GA  +++ +  LPLAT +++FY+APL+++ +   FLKER + G+
Sbjct: 62  TEHISVHLWRANIGSVGALFLIIGLMALPLATVSSLFYSAPLMIILMGYWFLKERITTGQ 121

Query: 123 VIATVTGFLGVLIVLRPSQFHWAALFALGTACSLALFNLLARTIPERQPVVTTLMWTTLF 182
           VI T+ GF+G+LI+LRPS+ +W  L  L +A + A+  L  + +P  +  V TLM   L 
Sbjct: 122 VICTLLGFVGILIILRPSEMNWFGLAVLFSAFTFAVNQLTLKKVPSTEHPVLTLMLYNLL 181

Query: 183 SLPISGLLAA------AYWQPLSLS----------QWLW-------------IAASSGLI 213
            +P + ++AA        W+ L ++           WL              IA  +GL+
Sbjct: 182 GIPATLVIAAFQGLEGLSWELLVVALLSNAFLLIYHWLCVLAYRRAQASDIAIAEYTGLL 241

Query: 214 FVAAFGAFWFAEMLDALTWLGIGMIILPLLPSAWLAKW 251
           F+   G   F E LD+L+WLG  +I+LP L   W+  W
Sbjct: 242 FIVFLGWLLFDEWLDSLSWLGAALIVLPSLFLPWIGMW 279