Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., ATP-dependent 23S rRNA helicase DbpA from Pseudomonas fluorescens FW300-N2E2

 Score =  489 bits (1259), Expect = e-143
 Identities = 252/458 (55%), Positives = 319/458 (69%), Gaps = 2/458 (0%)

Query: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62
           A +F  L L   +LANLE++G+A MTPIQAQSLP ILKG D+I Q KTGSGKTAAFG+G+
Sbjct: 5   ATAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64

Query: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
           L+ +N + F  QALV+CPTRELADQVA +IR L RA  NIKVLTLCGG+  GPQI SLEH
Sbjct: 65  LNPINPRFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEH 124

Query: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
           GAHI+VGTPGRI  HL K  + L  LNTL+LDEADRML+MGF +A+E II   P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTL 184

Query: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQ 242
           LFSATYP  I+Q++    RN   +K EA H  + I Q FY++     R +A+  +L H +
Sbjct: 185 LFSATYPVGIKQLSSKFMRNPQQVKAEAFHSDAQIEQRFYEI-APEERMDAVVKVLAHFR 243

Query: 243 PTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302
           P S V FC TK++VQ   D L   G S + LHGD+EQR+RDQ L  FAN+S S+LVATDV
Sbjct: 244 PASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDV 303

Query: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM 362
           AARGLD+D LD V N +L+RD E+H+HR+GRTGRAG KG+A S  + +E++R   I++  
Sbjct: 304 AARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQ 363

Query: 363 DIAIEPSTLPQ-PAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKI 421
              +    L    + G  P    M T+ I  G+KDKVRPGDILGALT +  +    +GKI
Sbjct: 364 KSPLSWDQLDNLKSQGGGPLLPAMSTLCIGAGRKDKVRPGDILGALTGEAGIPGAQVGKI 423

Query: 422 NLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLL 459
            +F  +AYVAV + IA +AL ++ +GK+KGR  R R+L
Sbjct: 424 AIFDFQAYVAVERGIAKQALQRLNDGKIKGRSLRVRIL 461