Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  280 bits (717), Expect = 7e-80
 Identities = 159/405 (39%), Positives = 232/405 (57%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           FAA NL P +LA +   G+   + IQ QS+P I+ G D+IGQ +TG+GKTAAF L +L  
Sbjct: 8   FAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 66  LNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125
           ++  +   QAL+L PTRELA QVAT   T  + +  + V+ + GG PMGPQ+ ++ +GA 
Sbjct: 68  IDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127

Query: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185
           I+V TPGR+ DHL +D   L+ +N LVLDEAD ML++GF + LE I  A PA RQT+LFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVLFS 187

Query: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245
           AT P SI  IA+   R+   +K++    T +  +  + +  +  +  A+ +LL      +
Sbjct: 188 ATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247

Query: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305
            ++F  TK+   ++A AL   G+    L+GD+ Q +R++ +    +  + I+VATDVAAR
Sbjct: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365
           GLDV  +  VFN D+  DPE +VHRIGRTGRAG +G A    +  E   +  I+      
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367

Query: 366 IEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSD 410
           +    LP   A        +           +   GD+L  LT+D
Sbjct: 368 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTAD 412



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 393 GKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKMKGR 452
           G +D +   ++LGA+ ++G L  E IG+I +    + V + +    K L K+ + ++ G+
Sbjct: 488 GARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDTRVAGK 547

Query: 453 QFRAR 457
           Q + R
Sbjct: 548 QLKLR 552