Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  254 bits (650), Expect = 3e-72
 Identities = 145/361 (40%), Positives = 224/361 (62%), Gaps = 8/361 (2%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +FA+L L   LL  LET+ +   TP+Q +++PA+LKG+D++   +TG+GKTA F L +L 
Sbjct: 2   TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61

Query: 65  NLNVKRFRV-----QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGS 119
            L ++  +V     +ALVL PTRELA+QV    R  G+ +  ++   + GG+ + PQ+ +
Sbjct: 62  RLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLP-LRTYAVYGGVSINPQMMA 120

Query: 120 LEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAER 179
           L  G  +LV TPGR+LD   ++ +  ++L  LVLDEADRML++GF + L+ + +A P +R
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180

Query: 180 QTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLL 238
           QTLLFSAT+  +I Q+A+ + R+ L ++V   +  + +++Q+   V+    + E    LL
Sbjct: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVD-KKRKSELFLHLL 239

Query: 239 LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298
              +    +VF  T++ V  + D L  +G S   +HGD  Q  R +AL +F    + +LV
Sbjct: 240 AEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLV 299

Query: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358
           ATDVAARGLD+ +L  V N+DL    E +VHRIGRTGRAG+ G A S  S +E  ++A I
Sbjct: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAI 359

Query: 359 D 359
           +
Sbjct: 360 E 360