Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  484 bits (1245), Expect = e-141
 Identities = 247/461 (53%), Positives = 327/461 (70%), Gaps = 4/461 (0%)

Query: 1   MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
           M + +F++L L   +LANL+ +G+A MTPIQAQSLP +LKG D+I Q KTGSGKTAAFG+
Sbjct: 1   MPSTAFSSLPLSAAMLANLDALGYAAMTPIQAQSLPVMLKGHDLIAQAKTGSGKTAAFGI 60

Query: 61  GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
            +L  LN + F  QALVLCPTRELADQVA ++R L RA  NIK+LTLCGG+ +GPQI SL
Sbjct: 61  ALLEPLNPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASL 120

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
           EHGAH++VGTPGR+ +HL K  + L  LNTLVLDEADRML+MGF +A+  II   PA RQ
Sbjct: 121 EHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPARRQ 180

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH 240
           TLLFSATYPA I+Q++ S  R+   ++ EA HD + I Q FY+++    R EA+  LL  
Sbjct: 181 TLLFSATYPAGIKQLSASFMRDPQQVRAEALHDDAQIEQRFYEID-PEQRMEAVTRLLAS 239

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
            +P S V FC TK++ Q + D L  +G S + L+GD+EQR+RDQ L  FAN+S+S+LVAT
Sbjct: 240 FRPESCVAFCFTKQQCQELVDHLSANGISAMALNGDLEQRDRDQVLAMFANRSLSVLVAT 299

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARGLD+D LD V N +L+RD E+HVHR+GRTGRAG++GLA S  +  E++R   I++
Sbjct: 300 DVAARGLDIDALDMVINVELARDAEIHVHRVGRTGRAGNQGLAVSLVAPAEAHRAQAIEK 359

Query: 361 YMDIAI--EPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHI 418
                +  +P    +P  GA P    M T+ I  G+KDK+RPGDILGALT D  +    +
Sbjct: 360 LQQAPLNWQPLDGLKPKGGA-PLQPPMATLCIGAGRKDKLRPGDILGALTGDAGIPGTQV 418

Query: 419 GKINLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLL 459
           GKI +F  +A+VAV + +  +AL ++  GK+KGR  + R+L
Sbjct: 419 GKIAIFDFQAFVAVERGVVKQALKRLNEGKIKGRSLKVRVL 459