Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  280 bits (716), Expect = 9e-80
 Identities = 154/367 (41%), Positives = 224/367 (61%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           FAAL +   +LA +  +G+   +PIQ+Q++P IL G D+IGQ +TG+GKTAAF L +LS 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 66  LNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125
           ++  R  VQAL+L PTRELA QVAT   T  + +  + V+ + GG PMGPQ+ ++  GA 
Sbjct: 68  IDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIRQGAQ 127

Query: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185
           ++V TPGR++DHLS++   LS +  LVLDEAD ML++GF + LE I  A P  RQT+LFS
Sbjct: 128 VIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVLFS 187

Query: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245
           AT P SI  IA+   R    IK+ A   T +  +  + +  +  + +A+  LL      +
Sbjct: 188 ATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDA 247

Query: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305
            + F  TK+   ++A AL   G+    L+GD+ Q +R++ +    +  + I+VATDVAAR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365
           GLDV  +  VFN D+  DPE +VHRIGRTGRAG +G A    +  E   +  I+   +  
Sbjct: 308 GLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQK 367

Query: 366 IEPSTLP 372
           +  + LP
Sbjct: 368 VAEARLP 374



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 19/78 (24%), Positives = 39/78 (50%)

Query: 380 PYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATK 439
           P A      +   G +D +   ++LGA+ ++G L  E IG+I +    + V + +    +
Sbjct: 474 PLAEGRARCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLER 533

Query: 440 ALNKIANGKMKGRQFRAR 457
            L K+ + ++ G+Q + R
Sbjct: 534 LLGKLKDTRVGGKQLKLR 551