Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  277 bits (709), Expect = 6e-79
 Identities = 158/405 (39%), Positives = 231/405 (57%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           FAAL L P ++A +   G+   + IQ QS+P IL G D+IGQ +TG+GKTAAF L +L  
Sbjct: 8   FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67

Query: 66  LNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125
           ++  +   QAL+L PTRELA QVAT   T  + +  + V+ + GG PMGPQ+ ++ +GA 
Sbjct: 68  IDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127

Query: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185
           I+V TPGR+ DHL +D   L+ +N LVLDEAD ML++GF + LE I  A P  RQT+LFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFS 187

Query: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245
           AT P SI  IA+   R+   +K++    T +  +  + +  +  +  A+ +LL      +
Sbjct: 188 ATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247

Query: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305
            ++F  TK+   ++A AL   G+    L+GD+ Q +R++ +    +  + I+VATDVAAR
Sbjct: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365
           GLDV  +  VFN D+  DPE +VHRIGRTGRAG +G A    +  E   +  I+      
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367

Query: 366 IEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSD 410
           +    LP   A        +           +   GD+L  LT+D
Sbjct: 368 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTAD 412



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 393 GKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKMKGR 452
           G +D +   ++LGA+ ++G L  E IG+I +    + V + +    + L K+ + ++ G+
Sbjct: 488 GARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDTRVAGK 547

Query: 453 QFRAR 457
           Q + R
Sbjct: 548 QLKLR 552