Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., ATP-dependent RNA helicase DbpA from Pseudomonas syringae pv. syringae B728a

 Score =  484 bits (1247), Expect = e-141
 Identities = 253/457 (55%), Positives = 322/457 (70%), Gaps = 4/457 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F +L L   +LANLE++G+A MTPIQAQSLP ILKG D+I Q KTGSGKTAAFG+G+L+
Sbjct: 19  AFNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLN 78

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
            +N + F  QALV+CPTRELADQVA +IR L R+  NIKVLTLCGG+  GPQIGSLEHGA
Sbjct: 79  PINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGA 138

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
           HI+VGTPGRI  HL K  + L  LNTL+LDEADRML+MGF +A+  II   P  RQTLLF
Sbjct: 139 HIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLF 198

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPT 244
           SATYP  I+Q++    R+   +KVEA H  S I Q FY++     R EA+  +L H +PT
Sbjct: 199 SATYPVGIKQLSSKFMRDPQTVKVEALHADSQIEQIFYEI-SPEQRLEAVVKVLGHFRPT 257

Query: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
           S V FC TK++VQ V D L   G S + LHGD+EQR+RDQ L  FAN+S S+LVATDVAA
Sbjct: 258 SCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAA 317

Query: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364
           RGLD+D LD V N +L+RD E+H+HR+GRTGRAG KG+A S  + +ES R   I+E    
Sbjct: 318 RGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 377

Query: 365 AIEPSTLPQPA--AGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKIN 422
            +      + +   G +   A M T+ I  G+KDK+RPGDILGALT +  +    +GKI 
Sbjct: 378 PLNWQQYDRLSIKEGGKLLPA-MTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIA 436

Query: 423 LFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLL 459
           +F  +AYVAV + +A +AL ++ NGK+KG+  R R+L
Sbjct: 437 IFDFQAYVAVERSMAKQALERLNNGKIKGKSLRVRIL 473