Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella amazonensis SB2B

 Score =  611 bits (1575), Expect = e-179
 Identities = 302/457 (66%), Positives = 371/457 (81%), Gaps = 1/457 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F+ L LK ELL NL +MG+  MTPIQAQSLPAIL G+DVIGQGKTGSGKTAAFGLG+L+
Sbjct: 11  AFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 70

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
            L+VKRFR+Q LVLCPTRELADQVA +IRTL R IHN+KVLTLCGG+PMGPQ+GSLEHGA
Sbjct: 71  KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 130

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
           HI+VGTPGRI+DHL +DR+DLS LN LVLDEADRMLEMGFQ  L+AIIA +P ERQTLLF
Sbjct: 131 HIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQTLLF 190

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPT 244
           SAT+P  I+ IAQ V  N +M+KV  TH+ S+I Q+FY +E   AR +AL+ LLL H+P 
Sbjct: 191 SATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQLLLLEHKPE 250

Query: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
           S+VVFCNTKRE Q VAD L  +GFSV+ LHGD+EQR+RD+ L+QFANKS  +LVATDVAA
Sbjct: 251 SAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 310

Query: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364
           RGLD+D LDAVFNY ++ D EVH+HRIGRTGRAGSKG A++FF+D + Y++A ++EY++ 
Sbjct: 311 RGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLER 370

Query: 365 AIEPSTLPQPA-AGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
            I+   LP  +  G+ P A  M+T+QIDGGKKDK+RPGDILGALT D  +    +GKI +
Sbjct: 371 DIQSEPLPSASLLGSMPLAPAMITLQIDGGKKDKLRPGDILGALTGDKGIEGAQVGKILV 430

Query: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
              RAYVAV +K+A KAL KI +G++KG+ +RA L+K
Sbjct: 431 TDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK 467