Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 637 a.a., ATP-dependent RNA helicase DeaD (RefSeq) from Shewanella amazonensis SB2B

 Score =  278 bits (711), Expect = 4e-79
 Identities = 153/378 (40%), Positives = 220/378 (58%), Gaps = 2/378 (0%)

Query: 2   NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
           N  +F  L L   +L  L+ +G+ T TPIQA S+  ++ GQD++GQ +TG+GKT AF L 
Sbjct: 4   NEKTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALP 63

Query: 62  VLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
           +L +++      Q LVL PTRELA QVA    +  + +    VL + GG  M  Q+ +L 
Sbjct: 64  LLCSVDANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALR 123

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            G  ++VGTPGR++DH+ +  + L  L  LVLDEAD ML+MGF + +E I+   P  RQ 
Sbjct: 124 RGPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQL 183

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLH 240
            LFSAT P  I+++A    RN + I + A+H T  SI Q F +V     + EAL  +L  
Sbjct: 184 ALFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQV-SQHNKLEALVRVLEV 242

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
                 ++F  T+     +A+ L   G++   LHGDM Q+ R++A+ Q  +  + IL+AT
Sbjct: 243 ENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIAT 302

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G+A  F +  E   +  I+ 
Sbjct: 303 DVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIER 362

Query: 361 YMDIAIEPSTLPQPAAGA 378
             +  I P  +P P + A
Sbjct: 363 ATNSRISPMKIPSPESVA 380



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 34/68 (50%)

Query: 390 IDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKM 449
           ID G+   V  G+I+GA+ ++  + + +IG+I L+     V +   +  + L  +   ++
Sbjct: 498 IDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDLPDGMPKEVLQHLKKVRV 557

Query: 450 KGRQFRAR 457
            G+    R
Sbjct: 558 CGKPLNIR 565