Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  256 bits (653), Expect = 3e-72
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 6/368 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL---G 61
           +FA L L PE L  +E +G+ T TPIQ Q++P +  G+DV+G  +TG+GKTA+F L    
Sbjct: 2   TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMID 61

Query: 62  VLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
           +L++   K    ++L+L PTRELA QV+ +    G+    + +  L GG  M  Q   L+
Sbjct: 62  ILASGKAKARMPRSLILAPTRELATQVSENFTLYGK-YQKLSMALLIGGESMNEQQKVLD 120

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            G  +L+ TPGR++D   +  I L ++  LV+DEADRML+MGF   +E I+A  P  RQT
Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLH 240
           L FSAT    I ++A +   N   +++E T   + ++ Q    V+ S  R EAL  LL  
Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKR-EALRQLLRR 239

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
              T++ +FCN KR+V  +  +L   GF ++ LHGDM Q  R + L +F    + ++V +
Sbjct: 240 ETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCS 299

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARG+DV  +  VFN+D+   PE ++HRIGRTGRAG  G A++  +  ++  +  I+ 
Sbjct: 300 DVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIEN 359

Query: 361 YMDIAIEP 368
            +   I P
Sbjct: 360 LLGKTIPP 367