Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  261 bits (668), Expect = 3e-74
 Identities = 151/405 (37%), Positives = 231/405 (57%), Gaps = 14/405 (3%)

Query: 2   NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
           +   F+ + L  +LL  +  +G+   TPIQA+++P  L GQDV+G  +TG+GKTAAFG+ 
Sbjct: 5   DVTEFSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVP 64

Query: 62  VLSNL-----NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
           +++ +           V+ LVL PTRELA+Q+A +++ L      IK   + GG+ + PQ
Sbjct: 65  LIAQMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTP-IKTGLVVGGVSINPQ 123

Query: 117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176
           I  L  G  IL+ TPGR+LD L +  +DL   + LVLDEAD+ML++GF  AL  I A  P
Sbjct: 124 ISRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLP 183

Query: 177 AERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALET 236
            +RQT+LFSAT P  + +IA S  ++ + I+V      +            A +   L+ 
Sbjct: 184 EQRQTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKE 243

Query: 237 LLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISI 296
           LL  H+   ++VF  TK  ++ +   L  +GFS   +HG+  Q +R++AL  F +  + I
Sbjct: 244 LLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKI 303

Query: 297 LVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVA 356
           LVATDVAARGLD+ ++  V+NY+L   P+ +VHRIGRT RAG  G A +F + +E   + 
Sbjct: 304 LVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELK 363

Query: 357 QIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401
            I + M++ I       P A  RP+   +   +   G++   +PG
Sbjct: 364 AIQKTMNLNI-------PVASGRPWEV-LPDAKAPAGRRGGGKPG 400