Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  255 bits (652), Expect = 2e-72
 Identities = 151/365 (41%), Positives = 214/365 (58%), Gaps = 7/365 (1%)

Query: 1   MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
           ++   F+ LNL   L A L  +G+   TPIQA+++PAIL G+D++   KTGSGKTAAF L
Sbjct: 21  LSTTDFSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFAL 80

Query: 61  GVLSNLNVKRF----RVQALVLCPTRELADQVATDIRTLGRAIH-NIKVLTLCGGMPMGP 115
            +L  L  +R      V ALVL PTRELA QVA    + G  +    KV+ + GG+ +  
Sbjct: 81  PLLQKLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNS 140

Query: 116 QIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAA 175
           Q+ +L  GA ILV TPGR+LD L  + + LS+L  LVLDEADRML +GF E L  I+   
Sbjct: 141 QMLALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQL 200

Query: 176 PAERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALE 235
           P ++QTLLFSAT+P  +  +   +  + + I+++    ++ I Q  Y V  S  +   L 
Sbjct: 201 PDQKQTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQ-SADIEQRVYTVNRSN-KTALLA 258

Query: 236 TLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSIS 295
            L+   Q    +VF + KR   ++A  L + G S    HGD  Q  R + L  F N  I+
Sbjct: 259 ELIKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEIT 318

Query: 296 ILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRV 355
           +L+ATD+AARG+D+D L  V N++L R P  ++HRIGR+GRAG  G A S  S +E +  
Sbjct: 319 VLIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHF 378

Query: 356 AQIDE 360
             I++
Sbjct: 379 KVIEK 383