Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (635), Expect = 2e-70
 Identities = 148/380 (38%), Positives = 220/380 (57%), Gaps = 8/380 (2%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           F + +  PE+L  +   G+  MTPIQ +++PAI +GQDV+   +TG+GKTAAF L +L  
Sbjct: 3   FESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 66  L-----NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
           +     + +R   +AL+L PTREL  QVA +I+   R +  I VLT+ GG+ M  Q   +
Sbjct: 63  MFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLP-ISVLTVYGGVKMDTQAAKV 121

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
           + GA I+V TPGR+L+HL    ++LS ++ LVLDEADRML+MGF   ++ I+     +RQ
Sbjct: 122 KKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQ 181

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLL 239
            LLFSAT+ ++++Q+A  +     +I V+  + T+ ++ Q  Y VE    R E L  L+ 
Sbjct: 182 NLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKR-ELLSELIG 240

Query: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
                  +VF  T+     +   L+  G     +H +  Q  R +AL +F    +  LVA
Sbjct: 241 KKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVA 300

Query: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
           T+VAARGLD+  L+ V N+DL    E +VHRIGRTGRAG  G+A S  S  E   +A I+
Sbjct: 301 TEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIE 360

Query: 360 EYMDIAIEPSTLPQPAAGAR 379
           + +   I   T+P    G+R
Sbjct: 361 KLIGNKIRRITIPGYEVGSR 380