Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  262 bits (670), Expect = 2e-74
 Identities = 148/359 (41%), Positives = 212/359 (59%), Gaps = 5/359 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SF +L L   +L  +   G+ T +PIQAQ++PA+L G+DV+   +TG+GKTA F L +L 
Sbjct: 2   SFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 65  NLN----VKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
            L+     +  +V+ALVL PTRELA Q+A  + T G+ +  ++   + GG+ + PQI  L
Sbjct: 62  LLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLP-LRSAVVFGGVGISPQISQL 120

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
           + G  ILV TPGR+LD   +D +  S+L TLVLDEADRML+MGF   ++ I+A  P +RQ
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH 240
            L+FSAT+   I  +A+ +  N + I V   + T++  Q          +  AL  L+  
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
                 +VF  TK     +A  L   G +   +HG+  Q  R +AL  F +  + +LVAT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
           D+AARGLD+D L  V N+DL   PE +VHRIGRTGRAG+ G A S  SD E+  +A I+
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIE 359