Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella loihica PV-4

 Score =  560 bits (1442), Expect = e-164
 Identities = 282/459 (61%), Positives = 350/459 (76%), Gaps = 1/459 (0%)

Query: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62
           + +F +L L P LL  L+++GF  MTPIQAQSLPAIL GQDVIGQGKTGSGKTAAFGLG+
Sbjct: 10  SGAFDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGL 69

Query: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
           L+ L+VKRFR+Q LVLCPTRELADQVA ++RTL R IHNIK+LTLCGG+PMGPQIGSLEH
Sbjct: 70  LNKLDVKRFRIQTLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEH 129

Query: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
           GAHI+VGTPGRI+DHL + R+DL  ++TLVLDEADRMLEMGFQ  L+AI+   P ERQTL
Sbjct: 130 GAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTL 189

Query: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQ 242
           LFSAT+P  I+ +++    + LM+KVE  H   SI Q+FY+   +  R +AL+ LLL HQ
Sbjct: 190 LFSATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLLKHQ 249

Query: 243 PTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302
           P S+VVFCNTKRE ++VA  L  +GFSV+ LHGD+EQR+RDQ L++FANKS S++VATDV
Sbjct: 250 PESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVATDV 309

Query: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM 362
           AARGLD+D LD V NY ++ D EVH+HRIGRTGRAGSKG A + F+  + Y+++ + + +
Sbjct: 310 AARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAAHTLFNHEDGYKLSLLADAL 369

Query: 363 DIAIEPSTLPQPA-AGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKI 421
              I+   LP  A     P    MVTIQIDGGKK KVRPGDILG LT D  +    +GKI
Sbjct: 370 GREIDGEALPGEALLDTMPPQPRMVTIQIDGGKKQKVRPGDILGCLTGDNGIEGSEVGKI 429

Query: 422 NLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
            +   R+YVAV +K+  KALNKI  GK+KG+ +RA  LK
Sbjct: 430 KITEFRSYVAVDRKVLRKALNKIVKGKLKGKSYRAWELK 468