Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  274 bits (701), Expect = 5e-78
 Identities = 152/371 (40%), Positives = 217/371 (58%), Gaps = 2/371 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F  L L   LL  L+ +G+   TPIQA S+  ++ G+D++GQ +TG+GKT AF L +L+
Sbjct: 7   TFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
            ++  R   Q LVL PTRELA QVA    +  + +  + VL + GG  M  Q+ +L  G 
Sbjct: 67  AIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRRGP 126

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            I+VGTPGR++DH+ +  + L  LN LVLDEAD ML+MGF + +E I+   P ERQ  LF
Sbjct: 127 QIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLALF 186

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P  I+++A    +  + I + A+H T  SI Q F +V     + EAL  +L     
Sbjct: 187 SATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQV-SQHNKLEALVRVLEVENT 245

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
              ++F  T+     +A+ L   G++   LHGDM Q+ R++A+ Q     + IL+ATDVA
Sbjct: 246 EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVA 305

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G+A  F +  E   +  I+    
Sbjct: 306 ARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATK 365

Query: 364 IAIEPSTLPQP 374
             I P  +P P
Sbjct: 366 SRISPMNVPSP 376



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 34/68 (50%)

Query: 390 IDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKM 449
           +D G+   V  G+I+GA+ ++  + + +IG+I LF     + + + +    L  +   ++
Sbjct: 496 LDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPEGMPKDVLQHLKKVRV 555

Query: 450 KGRQFRAR 457
            G+    R
Sbjct: 556 CGKPLNIR 563