Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  253 bits (646), Expect = 1e-71
 Identities = 141/370 (38%), Positives = 221/370 (59%), Gaps = 9/370 (2%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           F  L L PE+L  +  MG+A  TPIQ Q++P +L+G+D+    +TG+GKTAAF L ++  
Sbjct: 3   FDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQR 62

Query: 66  L--------NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQI 117
           L        +  +  V+AL+L PTRELA QV   +++  +  H  + + L GG+ + PQI
Sbjct: 63  LLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTH-FRSICLFGGVDIKPQI 121

Query: 118 GSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPA 177
             ++ G   +V TPGR+LDH+ +  +  +++  LVLDEADRML+MGF   ++ I+   P 
Sbjct: 122 AEMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNMLPK 181

Query: 178 ERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETL 237
            RQ+LLFSAT+   I+++A ++ ++ ++++V   +  +    +         + + L  L
Sbjct: 182 TRQSLLFSATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDLLIKL 241

Query: 238 LLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISIL 297
           L   + T ++VF  TK+    +A  L ++G +   +HGD  Q ER +AL  F N    +L
Sbjct: 242 LRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGGCKVL 301

Query: 298 VATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQ 357
           VATDVAARGLD+D+L  V N++L   PE +VHRIGRTGRAG +G A S    +E   +A 
Sbjct: 302 VATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVGYLAD 361

Query: 358 IDEYMDIAIE 367
           I++ + + IE
Sbjct: 362 IEKLIKMQIE 371